Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq997 315 3e-81 seq960 104 9e-18 >seq997 Length=29618 Score = 315 bits (348), Expect = 3e-81 Identities = 375/508 (74%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 24359 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCGCCTGCACCTGAAATCCTCGACCAGTT 24416 |||| ||||||| |||| |||| || ||||| |||||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 24417 TCTGGATGAAAAGGAAGGTAACCACACCACAGCATACCGTGATGGTACGGGTATCTGGAC 24476 |||| ||||||| || |||||| | ||| || ||| |||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 24477 CATCTGCCGCGGTGCCATCCTGGTGGATGGTAAACCTGTCGTCCCGGGCATGAAGTTGTC 24536 || |||||||| || | |||| ||| ||||||| || || | ||||||||| ||| | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 24537 GAAGGAAAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 24596 ||| |||||| | | ||| || || || || || ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 24597 GAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 24656 || || || ||||| |||||||| |||||||| || ||||| || |||||||| Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 24657 GTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGAATTAATGCAGG 24716 ||||||||| || || |||||||| |||||||| ||||| || | || || ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 24717 TGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 24776 ||| || || || ||||| || |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 24777 CCGTATTCGTTCA---------AACAACTGTTACGGTCAGATATCCCGTCGTGACCAGGA 24827 ||| | | | ||| ||| ||||||||| || || || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 24828 GAGCGCGCTGGCGTGCTGGGGAATCGAC 24855 || || ||||||||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 203 bits (224), Expect = 1e-47 Identities = 293/411 (71%), Gaps = 13/411 (3%) Strand=Plus/Minus Query 25924 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 25983 ||||| || || |||||||| |||||||||||| ||||||||||||| |||| ||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 25984 ---CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCT 26040 || ||||| || |||||||| | ||||||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 26041 GCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTG 26100 ||||| ||||| |||||| | | || || ||||||| || | | ||| |||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 26101 CGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGCATCAACGCCACCTGCTCCGGTACC 26160 | | ||||| ||||| |||||||| |||| ||||||| | ||| ||| | | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAAC 17949 Query 26161 GTGCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGAC 26220 | ||| ||||||||| |||| ||| |||| |||||||| |||| | ||| Sbjct 17948 GG------AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 26221 ACCGCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26280 ||||||||||||||||||||||||||||| | || | | ||| || ||||||| | Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 26281 GAAGGGGCACAGGACTATATCCGCACTCAGTGCCTGAACT-AAGTTTTGCT 26330 | ||| |||| || ||||||||||| | || | ||||||| || Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTTCT 17784 >seq960 Length=33163 Score = 104 bits (114), Expect = 9e-18 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44363 AACTATGACCCGGAAAAACGCACTTACAGCGGTATCTGGGACGGCAGCCTGAAACCGGCA 44422 ||||| || |||| | || || |||||||| | |||||||||| | | || |||| Sbjct 13055 AACTACGATCCGGCCACCCGGACCTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCC 13114 Query 44423 TACAGCAATAACCCGGCCTGGTGCCTGTGGGACATGCTGACCCACCCGCGCTACGGAATG 44482 | | | | |||||||||||| | | ||| ||||| |||| ||| || || | Sbjct 13115 TGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTC 13174 Query 44483 GGAAAACGTCTGGGGGCGGCGGATGTGGACAAGTGGGCGCTGTATGCCATCGGGCAGTAC 44542 || | | || || || | ||||||||||||| |||||| |||||| |||||| Sbjct 13175 GGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTAC 13234 Query 44543 TGCGACCAGACGGTCCCGGATGGTTTCGGGGGCACAGAGCCGCGGATGACCT 44594 ||||||||| |||| | ||||| || ||||| |||||||| | |||| Sbjct 13235 TGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCACCGAGCCGCGCTTTACCT 13286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185250453386576