Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_004813.1
Length=57930
Score E
Sequences producing significant alignments: (Bits) Value
seq997 315 3e-81
seq960 104 9e-18
>seq997
Length=29618
Score = 315 bits (348), Expect = 3e-81
Identities = 375/508 (74%), Gaps = 13/508 (3%)
Strand=Plus/Minus
Query 24359 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCGCCTGCACCTGAAATCCTCGACCAGTT 24416
|||| ||||||| |||| |||| || ||||| |||||| | | ||| ||||| |||||
Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843
Query 24417 TCTGGATGAAAAGGAAGGTAACCACACCACAGCATACCGTGATGGTACGGGTATCTGGAC 24476
|||| ||||||| || |||||| | ||| || ||| |||||| ||||| |||||
Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783
Query 24477 CATCTGCCGCGGTGCCATCCTGGTGGATGGTAAACCTGTCGTCCCGGGCATGAAGTTGTC 24536
|| |||||||| || | |||| ||| ||||||| || || | ||||||||| ||| |
Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723
Query 24537 GAAGGAAAAATGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 24596
||| |||||| | | ||| || || || || || ||||||| ||||||||||| ||
Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663
Query 24597 GAAAAACATCAAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 24656
|| || || ||||| |||||||| |||||||| || ||||| || ||||||||
Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603
Query 24657 GTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTACAGACGAATTAATGCAGG 24716
||||||||| || || |||||||| |||||||| ||||| || | || || ||||| ||
Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543
Query 24717 TGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 24776
||| || || || ||||| || |||||||||||||||| |||| |||| | |||||
Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483
Query 24777 CCGTATTCGTTCA---------AACAACTGTTACGGTCAGATATCCCGTCGTGACCAGGA 24827
||| | | | ||| ||| ||||||||| || || || ||||||||
Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423
Query 24828 GAGCGCGCTGGCGTGCTGGGGAATCGAC 24855
|| || ||||||||||||| || |||
Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 203 bits (224), Expect = 1e-47
Identities = 293/411 (71%), Gaps = 13/411 (3%)
Strand=Plus/Minus
Query 25924 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 25983
||||| || || |||||||| |||||||||||| ||||||||||||| |||| |||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129
Query 25984 ---CTGGAACAGGCGAATGCCACCATTACTGACATGCAGGTGCGCCAGCGTGATGTTGCT 26040
|| ||||| || |||||||| | ||||||||| ||||||||||||| |||
Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069
Query 26041 GCGCTCGATGCAAAATACTCGAGGGAGTTAGCCGATGCGAGAGCTGAAAATGAAACTCTG 26100
||||| ||||| |||||| | | || || ||||||| || | | ||| ||||
Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009
Query 26101 CGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGCATCAACGCCACCTGCTCCGGTACC 26160
| | ||||| ||||| |||||||| |||| ||||||| | ||| ||| | |
Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAAC 17949
Query 26161 GTGCGTGAAGCCACCGGCACCTCCGGCGTGGATAATGCAACCGGCCCCCGACTGGCAGAC 26220
| ||| ||||||||| |||| ||| |||| |||||||| |||| | |||
Sbjct 17948 GG------AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895
Query 26221 ACCGCTGAACGGGATTATTTCATCCTCAGAGAACGGTTGATGACAATGCAGAAGCAGCTG 26280
||||||||||||||||||||||||||||| | || | | ||| || ||||||| |
Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835
Query 26281 GAAGGGGCACAGGACTATATCCGCACTCAGTGCCTGAACT-AAGTTTTGCT 26330
| ||| |||| || ||||||||||| | || | ||||||| ||
Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTTCT 17784
>seq960
Length=33163
Score = 104 bits (114), Expect = 9e-18
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 44363 AACTATGACCCGGAAAAACGCACTTACAGCGGTATCTGGGACGGCAGCCTGAAACCGGCA 44422
||||| || |||| | || || |||||||| | |||||||||| | | || ||||
Sbjct 13055 AACTACGATCCGGCCACCCGGACCTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCC 13114
Query 44423 TACAGCAATAACCCGGCCTGGTGCCTGTGGGACATGCTGACCCACCCGCGCTACGGAATG 44482
| | | | |||||||||||| | | ||| ||||| |||| ||| || || |
Sbjct 13115 TGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTC 13174
Query 44483 GGAAAACGTCTGGGGGCGGCGGATGTGGACAAGTGGGCGCTGTATGCCATCGGGCAGTAC 44542
|| | | || || || | ||||||||||||| |||||| |||||| ||||||
Sbjct 13175 GGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTAC 13234
Query 44543 TGCGACCAGACGGTCCCGGATGGTTTCGGGGGCACAGAGCCGCGGATGACCT 44594
||||||||| |||| | ||||| || ||||| |||||||| | ||||
Sbjct 13235 TGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCACCGAGCCGCGCTTTACCT 13286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 185250453386576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |