Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_004928.1
Length=167560
Score E
Sequences producing significant alignments: (Bits) Value
seq236 201 1e-46
seq637 143 3e-29
seq895 82.4 8e-11
>seq236
Length=545527
Score = 201 bits (222), Expect = 1e-46
Identities = 158/188 (84%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 62058 AGCCATTATAGACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTC 62117
|||| ||| || || |||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 30899 AGCC-TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTC 30841
Query 62118 AGAGAGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCC 62177
|||||||| ||||| || |||||||| || || || |||||||||||||| ||||||||
Sbjct 30840 AGAGAGTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCT 30781
Query 62178 GGATGCTTAACTGCATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGA 62237
|| |||| ||| || || ||| |||||||| ||||| | ||| ||||| ||||| |||
Sbjct 30780 GGGTGCTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGA 30721
Query 62238 CCACCTTC 62245
||||||||
Sbjct 30720 CCACCTTC 30713
>seq637
Length=122170
Score = 143 bits (158), Expect = 3e-29
Identities = 138/177 (78%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 62072 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 62131
|| ||| || ||||| | ||||||||| |||||||||| |||||| |||||||| ||
Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174
Query 62132 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 62191
||||| || || |||||||||||||||||||| |||||||| || ||||| | | ||
Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234
Query 62192 ATCTTCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248
||| ||| |||| || || | ||| ||||||||||| ||||||||||| ||
Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq895
Length=39754
Score = 82.4 bits (90), Expect = 8e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 62076 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62135
||||| || || | || || || ||||||| || | ||||| | ||||| || ||
Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939
Query 62136 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 62195
||||| || || || ||||||||||| | ||| || || || |||||| || |||||
Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999
Query 62196 TCCAGAGTTTCGCGACGCAGAATGTTAACGTTCAGGTGTTGACCACCTTCAAT 62248
|| | || || || | ||||||||||||||| || || || |||||
Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 536051978764800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |