Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq236 170 2e-37 seq974 123 3e-23 seq637 118 1e-21 >seq236 Length=545527 Score = 170 bits (188), Expect = 2e-37 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||||| |||||||| |||||||| || ||||||||||| || || || || ||||| || Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 ||||| || | |||| || || |||||| | || | |||||||||||||| || Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCAC 30710 >seq974 Length=31311 Score = 123 bits (136), Expect = 3e-23 Identities = 245/357 (69%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 135849 TTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGTC 135908 ||||| || | || | ||| ||||| | || | |||||||| ||||| | || ||| Sbjct 13 TTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGGTAGAACAGGGTC 72 Query 135909 GCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTTC 135968 || || ||||| || | ||||| || ||||| || || || || ||||| || || || Sbjct 73 GCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTCTGGAAGTGCTTA 132 Query 135969 CAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCC-CGATCTTAGAT-CCTTC 136024 |||| |||||| ||| || || ||| ||||||| ||| ||| | | || Sbjct 133 TAGAACGGGATACAGCCGGTGTG--GAATGCTTCACC--GCCGCGAATCGGGCTGCCCAG 188 Query 136025 CGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGAT 136084 ||| || || ||| |||||||| ||||| || ||||||| | || || || | ||| Sbjct 189 CGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTATTTCACGAT 248 Query 136085 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCACGA 136144 || | | || |||||||| | || |||| ||| || |||| ||||| || Sbjct 249 GGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGTACGCAGGA 308 Query 136145 ACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGAT 136201 || || || || ||||| || ||||| || | ||| || || ||||||||||| || Sbjct 309 GCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAGAGAAAT 365 >seq637 Length=122170 Score = 118 bits (130), Expect = 1e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53632 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53691 || || ||||| | ||||||||| ||||||| ||| |||||| || || || || Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 53692 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53751 ||||| ||||| || || || || ||||| || || |||||||||||||| | || || Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238 Query 53752 AGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTC 53801 |||| |||||| || || |||||| | |||| |||||||||||||| Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTC 107288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524717832938720