Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq974 138 2e-27 seq962 132 8e-26 >seq974 Length=31311 Score = 138 bits (152), Expect = 2e-27 Identities = 254/369 (69%), Gaps = 10/369 (3%) Strand=Plus/Minus Query 147148 TTTCGCTACCTACACCGATTATGGCAGGCGTTCGTACCCCGACACGTCAATTTAGCTCGT 147207 |||| || ||||| || || ||| | ||||| || ||||| || ||||| || ||||| | Sbjct 364 TTTCTCTGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCT 305 Query 147208 GTGTGAAAATCGAATCTGGCGACTCGCTGCGTTCGATCAACAAGGTATCTGAAGCTATCG 147267 | || ||||| | ||| ||| ||| ||| |||||| || || |||| Sbjct 304 GCGTACTGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCG 245 Query 147268 TTGATTACATTAGTAAACGTGCGGGTATTGGCGTAAACGGTGGTGCAATTCGAGCAGAGG 147327 | | ||| || | ||||| ||||| ||| | |||| ||| || || || || Sbjct 244 TGAAATACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGG 185 Query 147328 GTT---CGGTTGTACGTGCGGGTGAA--ATTCGTCACACTGGCGTAATTCCTTTCTGGAA 147382 | || || || | |||||| |||| ||||| ||| || || |||| || Sbjct 184 GCAGCCCGATT---CGCGGCGGTGAAGCATTC--CACACCGGCTGTATCCCGTTCTATAA 130 Query 147383 ACACTTTCAGACTGCGGTTAAATCGTGTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGAC 147442 ||||| ||||| ||||| ||||| || ||||| || || || || |||||||||||||| Sbjct 129 GCACTTCCAGACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGAC 70 Query 147443 TCTGACTTACCCGATCTGGCACTTAGAAGTAGAAAAGCTTCTTGTTCTGAAGAACAACAA 147502 ||| ||||| || |||||| | ||||| |||| || || || ||||| |||||| Sbjct 69 CCTGTTCTACCCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCG 10 Query 147503 AGGTGTTGA 147511 |||||||| Sbjct 9 TGGTGTTGA 1 >seq962 Length=32987 Score = 132 bits (146), Expect = 8e-26 Identities = 576/897 (64%), Gaps = 23/897 (3%) Strand=Plus/Minus Query 7631 AAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTGGT 7690 || ||||| ||||| |||||| ||||||||||| || ||| || || | || ||| Sbjct 25740 AATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGGT 25681 Query 7691 ACAGTGTCGAAACAATATGCACTGGAAGAATAT-CTACCGAAGCACATTG---CAGACGC 7746 | || | ||||| ||||| | | || | | || ||| | | | ||| ||| Sbjct 25680 ATCGTCGCCAAACACTATGCCC-GTCAGCACCTGCTGCCGCGCGATGTGGTCTCAG-CGC 25623 Query 7747 TCATATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATT 7806 | | || ||| || || || | |||||| || || ||| || | |||||| || Sbjct 25622 ACG-AGCG-CGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTT 25565 Query 7807 CAACTGTATGCTTATCGACATCAAGGGGATGTTCGAAGGTGGGTTCAAAATGGGTAACGC 7866 |||||||||||| || ||| | || || ||| | ||||| |||||||||||||| Sbjct 25564 CAACTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGC 25505 Query 7867 TGAAATTGAAGAGCCAAATAGCATTGCGACTGCTGCGACTATCGTAACTCAGATCATTCA 7926 || |||||| |||||| ||| | || || | | || | ||||| || Sbjct 25504 CGAGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGC 25445 Query 7927 GCAAGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCGACGAAGTGCTTGC 7986 || || ||||||||| || ||||||| ||| || || ||||| ||||||||||| || Sbjct 25444 CCAGGTCGCCAGCCACATTTACGGCGGCACCACCATTAACCGCATTGACGAAGTGCTGGC 25385 Query 7987 TCC--TTATGTTCGCAAGTCGTACTACAAATGGTTAG-AAATCGGTCGAGAAGAACATCC 8043 || || || |||||| | | |||| | | ||| ||| | |||| | | Sbjct 25384 CCCGTTTGTGACCGCAAG--CTTCAACAA--GCACCGCAAAACGGCC--GAAG-AGTGGC 25332 Query 8044 AGATTCAGATTCAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGAAAGAAACGTATGA 8103 |||| | | | |||| || ||| | || ||||||||| ||||| Sbjct 25331 AGATCC-----CGGACGCCGACGGCTATGCGCACTCGCGCACTGAGAAAGAGTGCTATGA 25277 Query 8104 TGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAGACACC 8163 ||||| ||| | | || || | || ||||| |||| || | || || ||||| || Sbjct 25276 CGCGTTCCAGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCC 25217 Query 8164 ATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAGAAAAG 8223 || ||| || || || | || || |||||| | |||| ||| | Sbjct 25216 GTTTGTGACCTTCGGTTTTGGCCTGGGCACCAGCTGGGAATCGCGTTTGATCCAGCAGTC 25157 Query 8224 CATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTCCCGAA 8283 ||| |||| || ||||| | || || || |||| ||||| || | |||||||| Sbjct 25156 CATCCTGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAA 25097 Query 8284 ACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTACGGAAT 8343 ||| || ||| | | ||||| | ||| |||| || ||||| ||||| || Sbjct 25096 ACTGGTATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACAT 25037 Query 8344 CAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAACTATGA 8403 ||| |||| || || ||||| || || || ||||||||||| || ||| ||||||| || Sbjct 25036 CAAACAGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGA 24977 Query 8404 AAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATTCTTGGG 8463 || | || || ||| || ||| || |||| ||||| || || ||| | || Sbjct 24976 TCAGGTCGTAAAAGTAACCGGGTCATTTAAAACGCCAATGGGTTGCCGCAGCTTCCTCGG 24917 Query 8464 TGAATGGAAAAATGAAGATGGCGAAACTGTATTCGACGGTCGTAATAACTTAGGTGT 8520 | || || ||||| | ||||| | |||||| ||||| ||| | || || Sbjct 24916 CGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCGGCGT 24860 Score = 114 bits (126), Expect = 2e-20 Identities = 227/336 (68%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 8894 TGGAAAGAACTGACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGT 8953 |||||||| || |||||||| ||||| || ||||| || |||||||| || || Sbjct 24492 TGGAAAGAGGAAACCGGCTACGGTTTCAGCCTGTACAGTACCCCAAGCGAGAACCTGTGC 24433 Query 8954 GATCGTTTCTGTCGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAA 9013 || || ||||| ||||| || | | | ||| ||| | || | | ||| ||| Sbjct 24432 GACCGCTTCTGCCGTCTGGACACCGCCGAGTTCGGCATCGTGGAAGGCGTGACCGATAAA 24373 Query 9014 GACTATTACACGAACTCGTTTCACTTAGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAG 9073 | || ||||| ||| || ||| | || ||| ||||| || || |||| ||| ||| Sbjct 24372 GGTTACTACACCAACAGCTTCCACCTCGACGTGGAGAAGAAGGTAAACCCGTACGACAAG 24313 Query 9074 ATTGATTTCGAAGCAGCATACCCAATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAA 9133 || || || ||||| || || || || || || || ||||||||||| | || Sbjct 24312 ATCGACTTTGAAGCGGCGTATCCGCCGATCGCCAACGGCGGCTTCATCTGCTACGGCGAG 24253 Query 9134 TTCCCGAACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAG 9193 | ||||||||| | ||||| | || | || || ||| ||||||||| ||| || Sbjct 24252 TACCCGAACATTCAGCACAACCTGAAGGCGCTGGAAGACGTGTGGGATTACAGCTATCAG 24193 Query 9194 AAAGTTGCGTACTTCGGCACAAACACGCCGATTGAC 9229 | || | || | |||||| |||||||| || ||| Sbjct 24192 CATGTGCCATATTACGGCACCAACACGCCCATCGAC 24157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783323233582560