Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq962 264 2e-65 seq974 156 6e-33 >seq962 Length=32987 Score = 264 bits (292), Expect = 2e-65 Identities = 833/1273 (65%), Gaps = 31/1273 (2%) Strand=Plus/Plus Query 37629 TTCATGCAGGCCGATATAGCCGATACTGACAGAAGCGCGTCCATTTTCAAATGCTTTCAT 37688 |||||| | |||||||||||| | | || ||||| || |||| || | | ||| Sbjct 24595 TTCATGGATGCCGATATAGCCCAGCGAAATCGACGCGCGGCCGTTTTTGAA-GATCTCAG 24653 Query 37689 -GATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAG 37747 || || || || | ||||| || || |||||||| ||||| | || || || || | Sbjct 24654 AGACGTCATCGTCCGCTTTCAGGCGCACGCCGCAGGCCCCTTCCATATAGAGGATAGGCG 24713 Query 37748 CCACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTA 37807 |||||| || || || || || || | | ||| ||| || || | | | Sbjct 24714 CCACGCGGGCTTTTACCCCTTCAAGGCGGGCGATACGGGTCATCAGCGCCTTGCGCGCCA 24773 Query 37808 CTTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTG 37867 | || || || ||||| || |||||| | |||||| || || || || | Sbjct 24774 GCTGCAGGCGTTCATCCAGCAGTGTCCAGAATTCAGCTTCATTGCCTTTGGCCTCCAGCG 24833 Query 37868 CGATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCAT 37927 |||| |||||||| ||||| | | || || || || ||||| || ||||| | | | Sbjct 24834 CGATGCGCGGCAGGTTCAGGCTGATGACGCCGAGGTTGTTACGCCCGTCGTGGATCTGCT 24893 Query 37928 TGCCATTTTCGTCTTCCCA-ACGATGCAAGAAACTGCGGCATCCCATAGGGAACTTAAAG 37986 ||| ||||| ||||| | ||| | | ||| |||||||| ||||| || ||||| Sbjct 24894 CGCCGTTTTCATCTTCGTATACGCCG-AGGAAGCTGCGGCAACCCATTGGCGTTTTAAAT 24952 Query 37987 CTGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAA 38046 || ||| || || || | ||| || |||||||||| || ||||| ||||| Sbjct 24953 GACCCGGTTACTTTTACGACCTGATCGTAGTTCAGAATATCCGGGTACATGCGCTTGCTC 25012 Query 38047 GCGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGT 38106 ||||||||||| ||||| || ||||| ||| ||| || || ||| | Sbjct 25013 GCGCACTCCAGCGCCAGCTGTTTGATGTCGTAATTCGGATCGCCAACTTTGTGGTTCAGC 25072 Query 38107 CCGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGT 38166 ||||| | || || ||||||||||||||||||| || | | | || || || Sbjct 25073 CCGTCGCGGATGGCGAATACCAGTTTCGGGAACACCGCCGTTTTGCGGTTCTTACCGAGG 25132 Query 38167 CCAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCC 38226 || | | || || ||| | | ||| |||| | ||||||||| ||| Sbjct 25133 CCGGAGATACGGTTGCGCAGGATGGACTGCTGGATCAAACGCGATTCCCAGCTGGTGCCC 25192 Query 38227 AGACCAAAGCCGAATGT-ACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCAC 38285 || ||||| ||||| || ||| || || || || ||||| |||| || || || ||||| Sbjct 25193 AGGCCAAAACCGAAGGTCACA-AACGGCGTCTGGCCGTTGGCGGTATGCAGGGTATTCAC 25251 Query 38286 CTCGTATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGT 38344 ||| || || || ||| | || ||||| ||| |||| | ||| || | ||| Sbjct 25252 CTCATACTCCAGCGACTGGAACGCGTCATAGCACT-CTTTCTCAGTGC--GCGAGTGCGC 25308 Query 38345 ATT--CTTTCGCATCTGGAATTTTCCAATAA-CGGGCTTCGTCCAAATGCTTTTCATGAG 38401 || | | || || || || | ||| | ||| | | | | ||||| | ||| Sbjct 25309 ATAGCCGTCGGCGTCCGGGATCTGCCACTCTTCGGCCGTTTTGCGG-TGCTTGT--TGAA 25365 Query 38402 TCATCT--TAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTA 38459 | | | ||| |||| ||||||||||||||||| || ||||| ||| |||||||||| Sbjct 25366 GCTTGCGGTCACAAACGGGGCCAGCACTTCGTCAATGCGGTTAATGGTGGTGCCGCCGTA 25425 Query 38460 AATGTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCT 38519 |||||| || || || || || |||||||| || || |||| ||||| || ||| Sbjct 25426 AATGTGGCTGGCGACCTGGGCGATAATCTGTGCCGTGACCGCAGTGGCGGTGGAGATGGA 25485 Query 38520 TTTCGGAGTTTCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTTGAC 38579 ||| || | ||| |||| || || ||||| |||||| | | ||||||||| | Sbjct 25486 TTTTGGCGGTTCAATCTCGGCGTTACCCATTTTAAACCCGTGGGTCAGCATGCCTTTCAG 25545 Query 38580 ATCTATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTG 38639 || |||| ||| ||||| ||||| |||||||| || |||||||| ||||| || |||| Sbjct 25546 GTCAATCAGCATACAGTTGAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGATAGTG 25605 Query 38640 CAGCCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAGATAATGCT---TTGCAAA 38696 | | || ||||| ||| | || || || || |||| ||| | Sbjct 25606 GATCTCACCGCGCTCGTGCGCTGAGACCACATCGCGCGGCAGCAGGTGCTGACGGGCATA 25665 Query 38697 GTGCTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTT 38756 ||| || || ||||| || | ||||||||| || || ||||| |||||| |||||| Sbjct 25666 GTGTTTGGCGACGATACCGGCCAGCAGATCGCGCTGGGTGGGGATCACTTTACTGTCTTT 25725 Query 38757 GTTAGCATTCTCATTCATGATGCCTTCATCTTCCTGCTTCATCAGTCCCATGATACGCTT 38816 ||| || || ||||| | | | | | ||||| | ||| || ||| || Sbjct 25726 GTTGGCGTTTTCATTGAGCAGGGCAGAGTTGGTCTGCTCTACCAGGCCACGGATCTCCTG 25785 Query 38817 GGTCATG-----TCGCTGTTCAAGTCGCGAGCAACGTCACGATCATAGCGGTATTCGATG 38871 | ||| | |||| |||| | || ||||||||||| | |||||| || ||| Sbjct 25786 GTTCAGGCGACCGCGCTTTTCACGCTGC-----ACGTCACGATCGTGGCGGTACTCAATG 25840 Query 38872 TAGGAGCGAGCCA 38884 |||| ||| |||| Sbjct 25841 TAGGCGCGGGCCA 25853 >seq974 Length=31311 Score = 156 bits (172), Expect = 6e-33 Identities = 246/350 (70%), Gaps = 2/350 (1%) Strand=Plus/Plus Query 43681 GTTGTTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGT 43740 |||||||||||| || || | |||| ||||| || |||||||| || ||| | || || Sbjct 12 GTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGGTAGAACAGGGT 71 Query 43741 AGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTT 43800 ||||| || ||||| || || ||||| ||||| ||||||||| |||||||| | || Sbjct 72 CGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTCTGGAAGTGCTT 131 Query 43801 CCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGC 43860 ||||||| ||| || |||||| ||||||| | ||||| | || || Sbjct 132 ATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGGCTGCCCAGCGC 191 Query 43861 ACGAATAGCG-CCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTG 43919 ||| || ||| || ||||||| |||||||| || || | | || || | ||||| | Sbjct 192 ACGGAT-GCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTATTTCACGATGG 250 Query 43920 AACTTGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGC 43979 || | || ||||| ||| ||| || ||| || | |||||| ||||| |||| Sbjct 251 CGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGTACGCAGGAGC 310 Query 43980 TAAACTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTAGA 44029 | ||||| || || ||||| || || |||| | |||||||| || ||| Sbjct 311 TGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAGA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746204065998560