Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq197 145 2e-29 seq65 84.2 5e-11 >seq197 Length=620651 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | | || ||||| | ||||| || ||||| || || |||||| Sbjct 446475 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 446534 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||||||||||| || || ||||| || || || | ||| || || ||| Sbjct 446535 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 446594 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || |||||||| || | ||| || || ||| Sbjct 446595 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 446654 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| ||||| || ||||| || || |||||||| Sbjct 446655 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | |||||| | || | || || ||||||||||| || |||||| Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| | || || ||||| || || || | ||| || || ||| Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| ||||| ||||| || | |||||| || || Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||| ||||||||||| || || || || |||||||| Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | | || ||||| | ||||| || ||||| || || |||||| Sbjct 448103 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 448162 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| || | ||||||||||| || || ||||| || || || | ||| || || ||| Sbjct 448163 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 448222 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || |||||||| || | ||| || || ||| Sbjct 448223 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 448282 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || ||||| || || |||||||| Sbjct 448283 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||||||||||||| | || | ||||||||||||||||| || Sbjct 448893 GTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 448952 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || || || ||||| || || Sbjct 448953 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 449012 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||| || || || || || ||||| ||||| || ||| Sbjct 449013 ACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTT 449072 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 449073 TTCACGAAAATCTGCAT 449089 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | |||||||||||||| || || ||||| || | || | |||||||| Sbjct 447180 ACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 447239 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || || ||||| || | |||||| || || || || ||||| ||||| || || Sbjct 447240 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 447299 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| ||||| || | ||| || || ||| || || || || || ||||| Sbjct 447300 ATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTG 447359 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || |||||||| Sbjct 447360 CCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| ||||||||||| || | || | ||||||||||||||||| || Sbjct 446736 GTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 446795 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || || || ||||| || || Sbjct 446796 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 446855 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||| || || || || || ||||| ||||| || ||| Sbjct 446856 ACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTT 446915 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 446916 TTCACGAAAATCTGCAT 446932 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| ||||| || | || ||||||||||| || ||| Sbjct 447908 GTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTCTAGTTGCTTACCA 447967 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || ||| Sbjct 447968 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTT 448027 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||| || || || || || ||||| || || || || Sbjct 448028 ACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTC 448087 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 448088 TTCACGAAAATCTGCATT 448105 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| || | || | |||||||| || || || ||| Sbjct 449596 GTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAAGCTGCTTGCCA 449655 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || ||||| ||||| ||||| || || Sbjct 449656 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTA 449715 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || ||| || ||||| | || || || || ||||| || || Sbjct 449716 ACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTTTCCCAGTCAGGGTC 449775 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || ||||||||||| ||| Sbjct 449776 TTCACGAATATCTGCATGTTG 449796 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| |||||||||||||| | || | ||||||||||||||||| || Sbjct 447420 GTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 447479 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC 104478 || || || || | ||| || || ||||| || || || || || || ||||| || Sbjct 447480 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGC 447535 >seq65 Length=1244346 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| | || ||||| | | |||||| || ||||| || || || || || | ||||| Sbjct 630826 TCTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTAATGAGAACCTTGTGGAAAGGTTCT 630885 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || || || || | ||||||| ||||| || ||||||||||| || || || || | Sbjct 630886 CCCAGGAAGTGCAAGTGACTGAAGCTAGATGCTTCTACGGATTCCAAATCGCCATGGAGA 630945 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || | ||||| || |||||| || | || || ||||| || Sbjct 630946 ATGTACATTCTGAAATGTACTCATTACTTATTGACACTTACAT 630988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151371934388152