Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq197 145 2e-29
seq65 84.2 5e-11
>seq197
Length=620651
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| |||| || | | || ||||| | ||||| || ||||| || || ||||||
Sbjct 446475 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 446534
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| || | ||||||||||| || || ||||| || || || | ||| || || |||
Sbjct 446535 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 446594
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || ||||| || |||||||| || | ||| || || |||
Sbjct 446595 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 446654
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || ||||| ||||| || ||||| || || ||||||||
Sbjct 446655 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | |||||| | || | || || ||||||||||| || ||||||
Sbjct 446931 ATACCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCA 446990
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| | || || ||||| || || || | ||| || || |||
Sbjct 446991 GACAGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGA 447050
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||| ||||| ||||| ||||| || | |||||| || ||
Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || ||||| ||||||||||| || || || || ||||||||
Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| |||| || | | || ||||| | ||||| || ||||| || || ||||||
Sbjct 448103 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 448162
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| || | ||||||||||| || || ||||| || || || | ||| || || |||
Sbjct 448163 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 448222
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || ||||| || |||||||| || | ||| || || |||
Sbjct 448223 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 448282
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || ||||| ||||| || ||||| || || ||||||||
Sbjct 448283 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| |||||||||||||| | || | ||||||||||||||||| ||
Sbjct 448893 GTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 448952
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || ||||| || ||||| || || || ||||| || ||
Sbjct 448953 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 449012
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || ||| || || || || || ||||| ||||| || |||
Sbjct 449013 ACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTT 449072
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 449073 TTCACGAAAATCTGCAT 449089
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | |||||||||||||| || || ||||| || | || | ||||||||
Sbjct 447180 ACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 447239
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| || || || ||||| || | |||||| || || || || ||||| ||||| || ||
Sbjct 447240 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 447299
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| ||||| ||||| || | ||| || || ||| || || || || || |||||
Sbjct 447300 ATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTG 447359
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || ||||| || || ||||||||
Sbjct 447360 CCAGTCAGGGTTTTCACGAAAATCTGCAT 447388
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| ||||||||||| || | || | ||||||||||||||||| ||
Sbjct 446736 GTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 446795
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || ||||| || ||||| || || || ||||| || ||
Sbjct 446796 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTC 446855
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || ||| || || || || || ||||| ||||| || |||
Sbjct 446856 ACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTT 446915
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 446916 TTCACGAAAATCTGCAT 446932
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| ||||| || | || ||||||||||| || |||
Sbjct 447908 GTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTCTAGTTGCTTACCA 447967
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || || || || || ||||| ||||| || |||
Sbjct 447968 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTT 448027
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || ||| || || || || || ||||| || || || ||
Sbjct 448028 ACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTC 448087
Query 104543 TTTACAAATATCTGCATT 104560
|| || || |||||||||
Sbjct 448088 TTCACGAAAATCTGCATT 448105
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || ||||| || | || | |||||||| || || || |||
Sbjct 449596 GTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAAGCTGCTTGCCA 449655
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || || || ||||| ||||| ||||| || ||
Sbjct 449656 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTA 449715
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || ||| || ||||| | || || || || ||||| || ||
Sbjct 449716 ACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTTTCCCAGTCAGGGTC 449775
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| || ||||||||||| |||
Sbjct 449776 TTCACGAATATCTGCATGTTG 449796
Score = 87.8 bits (96), Expect = 4e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| |||||||||||||| | || | ||||||||||||||||| ||
Sbjct 447420 GTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCG 447479
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC 104478
|| || || || | ||| || || ||||| || || || || || || ||||| ||
Sbjct 447480 GCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGC 447535
>seq65
Length=1244346
Score = 84.2 bits (92), Expect = 5e-11
Identities = 117/163 (72%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913
||||| | || ||||| | | |||||| || ||||| || || || || || | |||||
Sbjct 630826 TCTTGGCATTCTTTGCTGCTTCTGATGGGATTGTTAATGAGAACCTTGTGGAAAGGTTCT 630885
Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973
|| || || || | ||||||| ||||| || ||||||||||| || || || || |
Sbjct 630886 CCCAGGAAGTGCAAGTGACTGAAGCTAGATGCTTCTACGGATTCCAAATCGCCATGGAGA 630945
Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|| | ||||| || |||||| || | || || ||||| ||
Sbjct 630946 ATGTACATTCTGAAATGTACTCATTACTTATTGACACTTACAT 630988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151371934388152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |