Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq813 176 1e-39 seq997 127 5e-25 >seq813 Length=55966 Score = 176 bits (194), Expect = 1e-39 Identities = 246/345 (71%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 21566 GCCACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATC 21625 ||| || ||||| |||||||| || |||||| ||| | ||||||||| ||| || | || Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTC 13498 Query 21626 CTGTCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 21685 ||| ||||| |||||| | || |||| || |||||| | ||| |||| ||| Sbjct 13499 AGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGA 13558 Query 21686 GCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTG 21745 ||||| |||||||| || | ||||| |||||||||||| || || ||||||||||| Sbjct 13559 ACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTG 13618 Query 21746 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 21805 ||| || |||||||| || ||| || || ||||||||||| ||| || ||||| Sbjct 13619 CCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGC 13678 Query 21806 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCC 21865 | |||| ||| |||| ||| || || || | | ||| || || || || Sbjct 13679 CAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGCC 13738 Query 21866 AAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 || ||| | | |||||||| |||||||||||||| ||||| Sbjct 13739 CAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783 >seq997 Length=29618 Score = 127 bits (140), Expect = 5e-25 Identities = 297/453 (66%), Gaps = 24/453 (5%) Strand=Plus/Minus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||||| || | ||||| || |||| |||| | ||||| ||| | | |||| || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAAGCC 37362 ||||| |||| || || || || || || ||| |||||||||||||||||||||||||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 37363 AC---------------------ATCCATCATCGCTGATATGCAGAAGCGGCAACATGAT 37401 || ||| |||| || ||||||| || || | |||| Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 37402 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 37461 | || | || || |||| |||||| || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 37462 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAACGCCTGCAAGTCGCCGCCACCTGT--- 37518 |||| | | ||||| |||||| ||||| || ||||| || ||| | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 37519 GCAAAGTCAACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCA 37578 || || | ||||||| || || |||||||||||| |||| |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 37579 GATGCTGAACTCAATTATTACCGTCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTT 37638 ||||||| |||||| | ||| ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 37639 AACTACCTGCAGGAGTACATCAGGACGCAATGC 37671 ||| |||||| | ||||| || || || ||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGC 17802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124813340951140