Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq986 810 0.0 seq997 196 1e-45 seq1102 95.1 3e-15 >seq986 Length=30461 Score = 810 bits (898), Expect = 0.0 Identities = 980/1331 (74%), Gaps = 2/1331 (0%) Strand=Plus/Plus Query 1486 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 1545 |||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| || Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803 Query 1546 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 1605 ||||| || | ||| || || || | ||| || ||||| |||||||| | || ||||| Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863 Query 1606 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 1665 | ||||| |||||| | ||| ||| ||||| | | || | |||||||||||| Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923 Query 1666 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 1725 || || || |||| | |||||||| || | || || || ||||| ||||| || || Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983 Query 1726 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 1785 || || |||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043 Query 1786 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 1845 || | | || || |||||||| || |||||||||| |||||||||||| || ||| Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103 Query 1846 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 1905 ||||| || || || |||||||| || | ||| | |||||||| | |||||||| ||| Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163 Query 1906 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 1965 || ||| ||||| ||| | || || || || |||||||| ||||| | || || ||| Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223 Query 1966 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTT 2025 ||||| ||||||| |||||| |||||||| || | ||||| |||| | | |||||| Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283 Query 2026 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 2085 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343 Query 2086 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCG 2145 || || || || || || || ||||| || || || ||||| || || | || || || Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403 Query 2146 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 2205 || || ||||| || || ||||| | |||||| ||||| || ||||| || || || ||| Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463 Query 2206 AGCGGAATAACGAGCGGATCAGATGCGGCTATTTTGTTAATTATTGATTCAGTCGCATCT 2265 || |||| || |||||||| | || | ||| || |||||||| ||||||||| Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523 Query 2266 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 2325 || ||||| ||||| || || || ||||||| ||| | | |||| | | | |||||| Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583 Query 2326 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 2385 || || | ||| ||||| || || || | || ||||| ||||| || |||||||| ||| Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643 Query 2386 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 2445 || |||||||| | |||||| || |||||||| | |||||||| |||||||| |||| Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703 Query 2446 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 2504 | || || || |||||| ||| | ||||| ||| | |||||| ||| |||||| Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762 Query 2505 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 2564 ||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| | Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822 Query 2565 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 2624 || || || | | ||||||||||| | || || || | ||||| || || || || Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882 Query 2625 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 2684 | ||||| |||| ||||| ||||| || || || || | | || | | ||| Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942 Query 2685 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 2744 || || || |||| ||||| |||||||| | |||||| || ||||||||| | |||||| Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002 Query 2745 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGGAGTGTAGCACTACAAATT 2804 ||||| |||||||| ||||||| | ||||||||||||||| ||||||||| ||| || Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062 Query 2805 ACTTTGATCGA 2815 |||||||| Sbjct 13063 CACTTGATCGA 13073 >seq997 Length=29618 Score = 196 bits (216), Expect = 1e-45 Identities = 249/340 (73%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 21826 AAAGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGC 21885 ||||| ||||| |||| ||| || |||||||| | ||||| || || || |||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 21886 CTGA-TGACTCGTCGTGAGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGA 21944 ||| | || || || ||| |||||| || |||| |||||| | ||||||| || Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 21945 TTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 22004 |||||| |||| |||| |||| | ||||||||| | | |||| || | ||||| || Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 22005 AATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAG 22064 || || ||||| || ||||||||||||||||||| |||||||| | | ||| | || Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 22065 CTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAA 22124 || | ||| ||||| || || | || ||||| || ||||||||||||| || | Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 22125 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAG 22164 || || |||| |||||| || | ||||||||||||| Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 >seq1102 Length=22075 Score = 95.1 bits (104), Expect = 3e-15 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 3103 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 3104 TTACGTA 3110 ||| ||| Sbjct 2214 TTATGTA 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132326780883284