Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_005841.1
Length=41391
Score E
Sequences producing significant alignments: (Bits) Value
seq986 810 0.0
seq997 196 1e-45
seq1102 95.1 3e-15
>seq986
Length=30461
Score = 810 bits (898), Expect = 0.0
Identities = 980/1331 (74%), Gaps = 2/1331 (0%)
Strand=Plus/Plus
Query 1486 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 1545
|||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| ||
Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803
Query 1546 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 1605
||||| || | ||| || || || | ||| || ||||| |||||||| | || |||||
Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863
Query 1606 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 1665
| ||||| |||||| | ||| ||| ||||| | | || | ||||||||||||
Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923
Query 1666 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 1725
|| || || |||| | |||||||| || | || || || ||||| ||||| || ||
Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983
Query 1726 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 1785
|| || |||||| || || ||||| || || ||||||||||| ||||| || || |||
Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043
Query 1786 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 1845
|| | | || || |||||||| || |||||||||| |||||||||||| || |||
Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103
Query 1846 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 1905
||||| || || || |||||||| || | ||| | |||||||| | |||||||| |||
Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163
Query 1906 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 1965
|| ||| ||||| ||| | || || || || |||||||| ||||| | || || |||
Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223
Query 1966 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTT 2025
||||| ||||||| |||||| |||||||| || | ||||| |||| | | ||||||
Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283
Query 2026 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 2085
|||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || |||
Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343
Query 2086 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCG 2145
|| || || || || || || ||||| || || || ||||| || || | || || ||
Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403
Query 2146 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 2205
|| || ||||| || || ||||| | |||||| ||||| || ||||| || || || |||
Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463
Query 2206 AGCGGAATAACGAGCGGATCAGATGCGGCTATTTTGTTAATTATTGATTCAGTCGCATCT 2265
|| |||| || |||||||| | || | ||| || |||||||| |||||||||
Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523
Query 2266 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 2325
|| ||||| ||||| || || || ||||||| ||| | | |||| | | | ||||||
Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583
Query 2326 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 2385
|| || | ||| ||||| || || || | || ||||| ||||| || |||||||| |||
Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643
Query 2386 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 2445
|| |||||||| | |||||| || |||||||| | |||||||| |||||||| ||||
Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703
Query 2446 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 2504
| || || || |||||| ||| | ||||| ||| | |||||| ||| ||||||
Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762
Query 2505 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 2564
||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| |
Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822
Query 2565 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 2624
|| || || | | ||||||||||| | || || || | ||||| || || || ||
Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882
Query 2625 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 2684
| ||||| |||| ||||| ||||| || || || || | | || | | |||
Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942
Query 2685 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 2744
|| || || |||| ||||| |||||||| | |||||| || ||||||||| | ||||||
Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002
Query 2745 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGGAGTGTAGCACTACAAATT 2804
||||| |||||||| ||||||| | ||||||||||||||| ||||||||| ||| ||
Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062
Query 2805 ACTTTGATCGA 2815
||||||||
Sbjct 13063 CACTTGATCGA 13073
>seq997
Length=29618
Score = 196 bits (216), Expect = 1e-45
Identities = 249/340 (73%), Gaps = 2/340 (1%)
Strand=Plus/Minus
Query 21826 AAAGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGC 21885
||||| ||||| |||| ||| || |||||||| | ||||| || || || ||||||||
Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305
Query 21886 CTGA-TGACTCGTCGTGAGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGA 21944
||| | || || || ||| |||||| || |||| |||||| | ||||||| ||
Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246
Query 21945 TTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 22004
|||||| |||| |||| |||| | ||||||||| | | |||| || | ||||| ||
Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186
Query 22005 AATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAG 22064
|| || ||||| || ||||||||||||||||||| |||||||| | | ||| | ||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126
Query 22065 CTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAA 22124
|| | ||| ||||| || || | || ||||| || ||||||||||||| || |
Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066
Query 22125 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAG 22164
|| || |||| |||||| || | |||||||||||||
Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026
>seq1102
Length=22075
Score = 95.1 bits (104), Expect = 3e-15
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 3103
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215
Query 3104 TTACGTA 3110
||| |||
Sbjct 2214 TTATGTA 2208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132326780883284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |