Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq813 486 1e-132 seq651 143 2e-29 >seq813 Length=55966 Score = 486 bits (538), Expect = 1e-132 Identities = 554/744 (74%), Gaps = 0/744 (0%) Strand=Plus/Minus Query 71895 GCAGGGCTTCAGCCGTCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACC 71954 || || || |||||||| ||| | || || |||||||| || || || ||||| || || Sbjct 23453 GCCGGTCTGCAGCCGTCGGATTTGATTATCGTCGCCGCGCGTCCGTCGATGGGTAAAACG 23394 Query 71955 ACGTTTGCGATGAATCTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTT 72014 || ||||||||||| |||||||||||||| || | | |||||||| ||| || || Sbjct 23393 ACATTTGCGATGAACCTCGTCGAAAATGCGGCGATGTTGCAGGATAAGCCGGTACTGATT 23334 Query 72015 TTTAGCCTTGAGATGCCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGC 72074 || |||||||||||||| | | ||| | |||||||| || ||||| || || | ||| Sbjct 23333 TTCAGCCTTGAGATGCCCTCCGAGCAGATCATGATGCGTTCTCTGGCATCGCTGTCGCGC 23274 Query 72075 GTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCT 72134 || || ||||| || || || || || || || |||| ||||| |||||||| | || Sbjct 23273 GTGGACCAGACCCGCATCCGTACCGGTCAGCTCGACGATGAGGACTGGGCGCGCATCTCC 23214 Query 72135 GGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTG 72194 ||| | ||||| |||||| |||| || | || || | |||||||||||| || |||| Sbjct 23213 GGCACCATGGGCATTCTGCTGGAAAAACGTAACATCTATATTGATGACTCCTCCGGCCTG 23154 Query 72195 ACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGC 72254 |||||||| || | ||||||||||| |||||| | ||| | || ||| | || Sbjct 23153 ACGCCGACGGAAGTCCGTTCCCGCGCGCGTCGTATCGCCCGCGAACACGGCGGTATCGGC 23094 Query 72255 ATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGAACG 72314 | || |||||||||||||| || || ||||||||||| ||| || ||||| ||| Sbjct 23093 CTTATCATGATCGACTACCTTCAGCTGATGCGCGTCCCGTCGCTCTCCGACAACCGTACG 23034 Query 72315 CTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCG 72374 ||||| || ||||| ||||| ||||| || |||||||| || || || | || || ||| Sbjct 23033 CTGGAGATCGCCGAAATTTCCCGCTCGCTCAAGGCGTTAGCCAAAGAGCTGCACGTGCCG 22974 Query 72375 GTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTA 72434 |||||||| |||| || ||||| || || || ||||| ||||| |||||||| ||||| Sbjct 22973 GTGGTGGCGCTGTCGCAGCTTAACCGCTCTCTGGAACAACGTGCCGACAAACGTCCGGTC 22914 Query 72435 AATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTG 72494 || || || | |||||||| || | || |||||||| || ||| | || |||||| | Sbjct 22913 AACTCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGATGCCGACTTAATCATGTTTATC 22854 Query 72495 TATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATC 72554 || || || || ||||||||| | | ||||| |||| || || ||||| | ||||| Sbjct 22853 TACCGTGATGAGGTTTATCACGAGAACAGCGACCTGAAAGGGATCGCCGAAATTATTATT 22794 Query 72555 GGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCA 72614 || || ||||| || ||||| || || |||||| | || | ||||||||||| | || Sbjct 22793 GGTAAACAACGTAACGGCCCGATCGGGACGGTGCGTCTGACCTTTAACGGCCAGTGGTCG 22734 Query 72615 CGGTTTGATAACTATGCCGGTGCT 72638 || || || |||||||||||| || Sbjct 22733 CGTTTCGACAACTATGCCGGTCCT 22710 Score = 136 bits (150), Expect = 2e-27 Identities = 231/332 (70%), Gaps = 2/332 (1%) Strand=Plus/Minus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 || |||||||| || || || | |||| ||||| || |||||||| | | || || Sbjct 13771 GGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATG 13712 Query 21123 CCAAATGGCGGCGCGGTCGG-AAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAA 21181 || | ||| ||||| || | || | | || | || || ||||| ||||| || || Sbjct 13711 CCGAGTGGTGGCGCAGTTGCCAACATTACGC-TGGCTACTTCCGAATCCTGGCGTGATAA 13653 Query 21182 GCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACT 21241 || || | ||||||||| || |||||||| || || |||| || ||||| Sbjct 13652 AGCGACCGGTGAGATGAAAGAGCAGACTGAATGGCACCGCGTGGTGCTGTTTGGCAAACT 13593 Query 21242 TGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACT 21301 || ||| |||| |||||||| | || ||||||||||||||||| |||||||| |||| Sbjct 13592 GGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATCGAAGGCCAACT 13533 Query 21302 TAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGT 21361 |||||||| ||||| ||| | |||| | || ||||| || ||| || | || Sbjct 13532 GCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGT 13473 Query 21362 CAGCCAGGGCGGCACCATGCAAATGATCGGCG 21393 | | ||||| |||||||| ||| | |||| Sbjct 13472 AAACGTTGGCGGTACCATGCAGATGCTGGGCG 13441 >seq651 Length=115633 Score = 143 bits (158), Expect = 2e-29 Identities = 292/429 (68%), Gaps = 6/429 (1%) Strand=Plus/Minus Query 65927 GCCAGCGCGCGGCAGGCAGAGGATATGCTCGCGCTTATGCGTAAGTCTCTGGGTTCTCTT 65986 |||||||| | | ||||| |||| ||| || || |||||||| | || || | Sbjct 28280 GCCAGCGCCAAGAAAGCAGAAGATACGCTGGCCCTGCTGCGTAAGAGCATCGGCTCGTTA 28221 Query 65987 CCTGTTGTTCCCCTGAGTGTTGAAAATCCCATTGAATTAACGCTGACCGACTGGGTACGT 66046 || || ||||| ||| | |||| || ||||| |||||||||||||| |||||||| Sbjct 28220 CCGGTCGTTCCGCTGGCGCTGGAAACGCCAATTGAGTTAACGCTGACCGAATGGGTACGC 28161 Query 66047 GATGGTAGTGCTCCACAGGGATTTCAAATGGGGGATGCGGCAGAACTTAAGGCAGTGCTT 66106 ||| ||| | ||||| || || || |||| || || || || || |||| Sbjct 28160 AGCGGTGCTGCGGCTCAGGGTTTCCAGATCCTTGATGAAGCCGAGCTGAAAGCCCTGCTG 28101 Query 66107 GAGGATGGCGGTATTGCCCGAGTGAAAAAGCAGGATTTGGGAAGCGATGAAATTTCCACA 66166 || |||||||| | ||| | ||| ||||||||| ||| ||||| ||||| || Sbjct 28100 GAAGATGGCGGCGTGATCCGCGCGAAGAAGCAGGATCTGGTGAGCGACGAAATCGCCGTC 28041 Query 66167 CACCTGGAAGCTGGCAAGCTCGTTACTAAGTTGGCACTCGACTGGCAGAAACGCATTAAA 66226 ||| | ||||| ||||| | || || ||| |||| |||||||||||| | || ||| | Sbjct 28040 CACATCGAAGCGGGCAAAGTGGTCACCAAGCTGGCGCTCGACTGGCAGCAGCGTATTCAG 27981 Query 66227 TTTACACTGGACCATAACTTCAGCCTTACCAGCGTC--AAATT-TGCGGATGAATTGCTT 66283 || || | | || | | | | |||||| || || ||| || || ||| Sbjct 27980 TTCGTGATGTGCGACGACGGCTCCGTGA--AGCGTCTGAAGTTCTGC-GACGAGCTGCGC 27924 Query 66284 GAGCAGAACTCTGATATTGATAGTGAAGATGTTGCGCAGCGACTGGACGCAGATTTCTTC 66343 || |||||| ||||| || || |||||| || ||||| | ||||| || ||| || Sbjct 27923 GATCAGAACGAAGATATCGACAGGGAAGATTACGCCCAGCGTTTCGACGCGGACTTCATC 27864 Query 66344 CTGTTGACC 66352 ||| ||||| Sbjct 27863 CTGATGACC 27855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303228569951874