Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1547 897 0.0 seq997 266 1e-66 >seq1547 Length=4346 Score = 897 bits (994), Expect = 0.0 Identities = 1199/1658 (72%), Gaps = 18/1658 (1%) Strand=Plus/Minus Query 15828 AAACCACTTCCGGCTATGAGCGCAGCCACCGCATCGACCTGCCGCAAGCGGGGAGCACCT 15887 ||||||| || || ||||| ||||||||||| || || | || || ||||| ||||||| Sbjct 4346 AAACCACCTCTGGTTATGAACGCAGCCACCGTATTGATTTACCTCAGGCGGGCAGCACCT 4287 Query 15888 GGACGCTCCGCCTGCGGAAAGTCTCTCCGGACGCCAACAGCGTCAAAATCGGCGATGTGA 15947 |||| || | ||||| ||| | | | || ||||| |||| || || ||||| || Sbjct 4286 GGACCATCAGGCTGCGCAAAATTACAGCCGATGCCAATAGCGCGAAGATTGGCGACACGA 4227 Query 15948 TGACGCTGCAGAGCTACACAGAAGTGATTGACGCGAAGCTGCGCTATCCCCACACAGCGC 16007 |||||||||| |||| ||| ||||| || ||||| || || |||||||| |||| |||| Sbjct 4226 TGACGCTGCAAAGCTTCACCGAAGTAATCGACGCCAAACTTCGCTATCCGAACACCGCGC 4167 Query 16008 TGCTTTATGTCGAATTTGATTCCAGTCAGTTTAACGGCTCCATTCCACAGATTTCCTGCG 16067 | || || ||||||||||||| || ||||| || ||||| ||||| || |||||||||| Sbjct 4166 TACTGTACATCGAATTTGATTCGAGCCAGTTCAATGGCTCAATTCCGCAAATTTCCTGCG 4107 Query 16068 AACCGCGTGGACGAGTTATCCGCGTTCCTGATAACTACAACCCGGAGAGCCGCGAATATA 16127 | || || ||||| ||||| || || || |||| ||| ||||||| | | |||| || Sbjct 4106 AGCCTCGCGGACGTGTTATTCGTGTGCCCGATACCTATGACCCGGAAA--CACGAACGTA 4049 Query 16128 C--CGGCACATGGACAGGTGGCTTTAAGTGGGCCTGGACGGATAACCCGGCATGGATTTA 16185 | |||||| ||||| || | ||||||||||| |||||||||||||| || ||||| | Sbjct 4048 CAGCGGCACCTGGACGGGCGCATTTAAGTGGGCATGGACGGATAACCCTGCGTGGATATT 3989 Query 16186 TTACGATATCGTTGTTTCAGACCGGTTTGGCCTAGGCAACCGTCTGACCAGCGCGAATAT 16245 ||||||| | || || | ||||| || ||||| || || || || || || || || Sbjct 3988 TTACGATCTGGTGGTCACTGACCGCTTCGGCCTTGGTAATCGGCTAACGGCAGCCAACAT 3929 Query 16246 CTCTAAATGGACGCTGTACCAGATCGCACAATACTGCGATCAGATGGTCCCCGATGGTAA 16305 | |||||||| || || ||| |||| ||||| || ||||| ||| || |||||||| Sbjct 3928 CGACAAATGGACTCTTTATCAGGTCGCTCAATATTGTGATCAATCGGTACCGGATGGTAA 3869 Query 16306 GGGAGGCGATGGCATGGAGCCTCGCTATCTCTGTAACGTCTACGTGCAGGAACGCAACGA 16365 ||| ||| || | || || || || ||| ||||| ||| | || || || || || Sbjct 3868 GGGCGGCAGCGGAACTGAACCACGTTACACCTGCAACGTATACATTCAAGATCGAAATGA 3809 Query 16366 TGCGTACACCGTGCTGCGCGATTTTGCCGCCATTTTCCGGGGGATGACCTGCTGGAGCGG 16425 || |||||||| ||||| ||||||||||||||||| || || ||||||| |||| | | Sbjct 3808 CGCTTACACCGTCCTGCGAGATTTTGCCGCCATTTTTCGAGGCATGACCTACTGGGGAGA 3749 Query 16426 TGAGCAGATTGTCGTACAGGCTGATATGCCGCGTGATGTCGACTTTAACTACACGCGGGC 16485 || |||||||| | | || || ||||| | |||||||| |||| |||||||| || Sbjct 3748 CGACCAGATTGTTGCCCTTGCAGACATGCCCAGAGATGTCGATTTTACCTACACGCACGC 3689 Query 16486 GAACATTAT---TGGCAAACCGCGCTATTCAAGCAGCACCAGTAAGGCTCGTTACACCAA 16542 ||| | | |||||| ||||| || ||||| | ||| ||| ||||| || Sbjct 3688 TAACGTAGTCGACGGCAAATTTGTGTATTCCAGTAGCACAACTAAAAGTCGCTACACAAA 3629 Query 16543 CGCGCTGGTCTCGTGGTCAGACCCGGCAAACGCCTACGCCGACGCAATGGAACCGGCGTT 16602 ||| || || || ||||| || |||||||| | ||| || || |||||||| || | || Sbjct 3628 CGCTCTTGTATCCTGGTCTGATCCGGCAAATGGCTATGCTGATGCAATGGAGCCAGTCTT 3569 Query 16603 CGTCCCGGAGCTGGTCAGCAGGTACAGCTTTAACCAGCTGGAAGTGACGGCCATCGGGTG 16662 || | ||||||||| | || | || |||||||| || | || |||||||| || Sbjct 3568 CGAACAGGAGCTGGTGGCGCGCTATGGTTTCAACCAGCTCGAGATCACCGCCATCGGTTG 3509 Query 16663 TACTCGACAGAGCGAAGCCCACCGTAAGGGCCTGTGGGGCATACTGACCAACAACAAAGA 16722 || || ||| || || || | || || | ||||| || ||||||||||| ||||| Sbjct 3508 CACCCGGCAGTCTGAGGCTAACAGGAAAGGGCGCTGGGGGATCCTGACCAACAATAAAGA 3449 Query 16723 CCGCATGGTTGAGATTGATGTGGGGCTGGACGGTAAAATCCCGCAGCCGGGCTACATCAT 16782 | || || | |||| || || ||||||||||| || || |||||||||||||| || Sbjct 3448 TAGGATTGTAACGTTTGACGTTGGTCTGGACGGTAATATTCCTCAGCCGGGCTACATAAT 3389 Query 16783 TGGACTGGCTGATGAACTTCTGGCCGGACGCGTGAACGGCGGGCG--TATCAGCGCAGTT 16840 || | ||||| | ||| | ||| | | ||||| || |||| ||| ||| Sbjct 3388 TGCTGTTTCTGATCGAAATCTTTCAGGAAGAGATTTAGGCGGTCGATTATC--CGCGGTT 3331 Query 16841 AATGGACGGGTGATTACCCTTGACCGGGATACTGA-TGCAAAAGCTGGTGACCGGCTGCA 16899 ||||| || || | | |||||||||| ||| | ||| || || |||||| || | Sbjct 3330 AATGGGCGTGTTCTCAAACTTGACCGGG-TACCAAGTGCTAAGGCCGGTGACAGGATAAT 3272 Query 16900 GCTGAACCTGCCGTCAGGCATATCTCAGGCCCGGACGATCCAGTCAGTCAACGGTCTCCG 16959 | | |||||||| || || || |||| |||| ||||| ||||| | |||| | Sbjct 3271 GGTAAACCTGCCATCGGGTATCACTCAATCCCGAACGATTCAGTCCCTGTCCGGT----G 3216 Query 16960 ACA-GGTCACGGTTACGACGGCGTACAGTGAGACGCCGGAGGTGGAATGTGTCTGGGTGA 17018 | | |||||| || || || || | || ||| || ||| || ||| ||||| | Sbjct 3215 AAATGGTCACCGTGACCACCGCTTTTAGCGAGCTTCCACAGGCCGAGGCTGTATGGGTTA 3156 Query 17019 TTGAGTCTGACGATCTGTATGTTCAGCAGTACCGCGTTATCGGGGTCAAGGACAACAACA 17078 |||| ||||| || || |||| ||||||||| | || || | |||| || ||||| Sbjct 3155 TTGAATCTGATGAACTCTATGCGCAGCAGTACAGGGTAATTAGTGTCACCGATAACAATG 3096 Query 17079 ACGCCACGTATACAATCACCGGCGTGGCCCACGATCCGGACAAATTCCCGCGTATCGATA 17138 ||| || ||||| ||||| || | ||||||||||| |||||| || || |||| Sbjct 3095 ACGGGACTTATACCATCACGGGGGCAAATCACGATCCGGATAAATTCGATCGCATTGATA 3036 Query 17139 CCGGCGCGATCATCGACCAGCGCCCGATAAGCGTTATCCCTCCAGGGAGTCAGCAGCCGC 17198 |||| || || || |||||||| ||| | ||||| ||||| || || | ||| ||||| Sbjct 3035 CCGGAGCCATGATTGACCAGCGGCCGGTGAGCGTGATCCCGCCGGGCAACCAGTCGCCGC 2976 Query 17199 CGGAAAGCATCGTTATCAGCTCGTATTCTGTGGTGAATCAGGGCATCAGCGTCGAAACGA 17258 | | || |||||| |||||||||| ||| |||||| | || |||||||||||||||| Sbjct 2975 CTGCAAACATCGTGATCAGCTCGTTTTCCGTGGTGCAGCAAAATATCAGCGTCGAAACGA 2916 Query 17259 TGCAGGTGCACTGGAATGCGGTGAAAGATGCGATTTCGTATGAAGCGCAGTGGCGACGTA 17318 ||| ||| |||| | || | | | || || | ||||||||||| ||||| || | Sbjct 2915 TGCGCGTGAGCTGGGACCAGGCGCAGAACGCTATCGCCTATGAAGCGCAATGGCGCCGCA 2856 Query 17319 ATGACGGTAACTGGATTAACGTGCCGCGCAGCTCGACCACCTCGTTCGAGGTCAGCGGCA 17378 | || || |||||| ||||||||||||||||||| ||||| || ||||| || | || | Sbjct 2855 ACGAGGGGAACTGGGTTAACGTGCCGCGCAGCTCCACCACGTCATTCGACGTTACGGGGA 2796 Query 17379 TTTACGCCGGTCGTTATCTGGCCCGTGTCCGGGCGATCAACGCTGCAGAGGTCTCCAGCG 17438 |||| |||| || || |||| || || || || |||||||| || || | || || Sbjct 2795 TTTATTCCGGGCGGTACCTGGTGCGCGTGCGTGCTATCAACGCAGCGGAAATTTCTTCCG 2736 Query 17439 GCTGGGCATATTCAGAAGAGAAAACGCTGACAGGAAAA 17476 | |||| ||||||||||||||| ||| |||| || ||| Sbjct 2735 GATGGGGATATTCAGAAGAGAAGACGTTGACCGGCAAA 2698 >seq997 Length=29618 Score = 266 bits (294), Expect = 1e-66 Identities = 531/784 (68%), Gaps = 12/784 (2%) Strand=Plus/Minus Query 12762 GCAACCTTTATTCAGGGATTTAAACCATGAGCCTTAACACAGATTATCAGAAGCTGGAGC 12821 |||||||| | |||| || ||||||| ||| ||||||||| || || | Sbjct 783 GCAACCTTCAAACAGGCATACGCACCATGA---TTACTGAAGATTATCAACGCCTCGAAC 727 Query 12822 CGGGTGATTCAATCCGGCTTTTTGAAATTGACGGTCGAGCCTTCAATATGGGTGAGGTTT 12881 ||||| | ||| || ||| |||| | |||||| || || | ||| || ||| Sbjct 726 CGGGTAAAAAAATACGTCTTCTTGAGGTAGACGGTTCTGCGTTTGGTCTGGACGACGTTC 667 Query 12882 TATATTTTCACGGTTATAACGTCCCGCATTCAGCCGAGGAAATCGTCGCCGCCGGTGGCG 12941 | ||||||| ||||||| |||||||| | || || || || | || || ||||||| Sbjct 666 TGCGCTTTCACGCTTATAACCTCCCGCATACTGCAGAAGAGATTGCGGCTGCTGGTGGCG 607 Query 12942 ATGAATCAAAGCTGCCAGCGAAAAGTATCTGGTGGCAGGGCATCGAATATAAAGCCTGGC 13001 | ||||||||| | ||||| |||||||||||||||||| || ||| ||||||| Sbjct 606 ACGAATCAAAGTTAAAGGCGAAGAGTATCTGGTGGCAGGGCGAAGAGTATGGTGCCTGGC 547 Query 13002 CGTGCGAGCTGGAAGGGATTGAATCCACCACCTCGGGGAGCGATGCGCAACCGACGCTGC 13061 | | |||| || || | ||| | | || || || || || |||||||| Sbjct 546 CATATAAGCTCGAGGGACTGGAAGCGTCATCCGATGGCAGTAGCGCCCAGCCGACGCTCA 487 Query 13062 GAGTGGGCAATATCGACGGGTCAATTACAGCACTATGCCTGTATTACGACGACATGGCGC 13121 || | ||| || ||| | || || || || || || ||| || ||||| ||| || Sbjct 486 CCGTTGCCAACATTGACAGCTCTATCACTGCGCTCTGTCTGGCCTATGACGATATGCTGC 427 Query 13122 AGGCGCGGGTCACGATACATGAGACCCAAAAGCAGTATCTCGATGCGCAAAACTTCCCGG 13181 |||| || ||||| ||||| || ||| || || ||||||| || ||||||| Sbjct 426 AGGCCAAAGTTACGATTCATGACACTTTTGCGCATTACCTGGATGCGCGCAATTTCCCGG 367 Query 13182 AGGGAAACACGTCAGCAGACCCTACGCAGGA---AAAGCGTCAGCTGTATTTTATCGATG 13238 | ||||| | ||||||| || ||||| |||||| | | | | |||||| | Sbjct 366 ATGGAAATCCAACAGCAGATCCCTTGCAGGTGAGAAAGCG---GGTTTTCTATATCGACG 310 Query 13239 CCAAAAATCTTGAAACT---GATGAAGCGGTGGAGTTCACTCTCTCAAGCCCGATGGACC 13295 |||||| || | | |||| | ||||| ||| ||||||||||||| | Sbjct 309 GTAAAAATAGCGAGCTTCCCGGTGAAAGTATCGAGTTTGTTCTTACAAGCCCGATGGATC 250 Query 13296 TGCAGGGGCTAATGATTCCTACCCGGCAATACCACTCGATTTGCACATGGTGTACTCGCA 13355 ||||||| | |||||||| ||| | || | || || ||||||||||||| | || | Sbjct 249 TGCAGGGATTGATGATTCCGACCAGACAGTTGCATTCCCTTTGCACATGGTGCATCCGGA 190 Query 13356 ACCAGTACCGCAGCGGCGATGGCTGCGATTATGCCGGGACAAAATATTTCGACAAGAATA 13415 | |||||||| ||||||||| |||||||||||||| || || ||||||| || | Sbjct 189 ATAGGTACCGCACCGGCGATGGGTGCGATTATGCCGGCACGCTTTACTTCGACAGAAACA 130 Query 13416 ACAAGCCGGTTGATGACCCATCGCAGGATGTCTGCCCAGGAACGCTTACGGCCTGCAAAT 13475 |||| ||||| || || || ||||| ||| || ||||| || |||||||| Sbjct 129 ACAATCCGGTAAGCGATCCCTCATTGGATGAATGCAACGGCACGCTCACCGCCTGCAAGC 70 Query 13476 TACGTCATGGCGAGCACAACGAGCTGCCGTTCGGCGGATTCCCTGGTACGTCGCTGATAA 13535 | || ||| || ||||| || || || ||||| || || || || || || |||| | Sbjct 69 TTCGGTTTGGTGAACACAATGAACTTCCTTTCGGTGGTTTTCCAGGAACATCTTTGATCA 10 Query 13536 GGAG 13539 |||| Sbjct 9 GGAG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164998084847164