Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq379 116 2e-21
seq8 114 7e-21
seq560 113 2e-20
seq429 111 8e-20
seq357 111 8e-20
seq3 109 3e-19
seq120 102 4e-17
seq260 95.1 6e-15
seq72 86.0 3e-12
>seq379
Length=326478
Score = 116 bits (128), Expect = 2e-21
Identities = 81/92 (88%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| |||| || ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 256737 AATATAAAAAGAAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 256796
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||||| |||||||||||||||||||||
Sbjct 256797 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 256828
>seq8
Length=2356637
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 735334 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 735275
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 735274 TGAGCTAATGGGCCG 735260
Score = 113 bits (124), Expect = 2e-20
Identities = 80/91 (88%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 11440 TAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
||||||||| | || | |||||||||| |||||||||| |||||||||||||||||||
Sbjct 734304 TAATAAAAAGTAAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 734363
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 734364 CCGACGCTCCAACCAACTGAGCTAATGGGCC 734394
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 736147 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAAC 736088
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 736087 TGAGCTAATGGGCCG 736073
>seq560
Length=164154
Score = 113 bits (124), Expect = 2e-20
Identities = 78/88 (89%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct 670 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAAC 611
Query 11516 TGAGCTAATGGGCCGTCGACGAT-TGTG 11542
||||||||||||||| || ||| ||||
Sbjct 610 TGAGCTAATGGGCCGATGAAGATGTGTG 583
Score = 111 bits (122), Expect = 8e-20
Identities = 74/83 (89%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||
Sbjct 51284 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAAC 51225
Query 11516 TGAGCTAATGGGCCGTCGACGAT 11538
||||||||||||||| || |||
Sbjct 51224 TGAGCTAATGGGCCGATGAAGAT 51202
Score = 89.7 bits (98), Expect = 3e-13
Identities = 75/89 (84%), Gaps = 3/89 (3%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||||||| ||||| || |||| || | |||||||||| |||||||||| ||||||||
Sbjct 41084 AAATATA-AATTA-TACAAAAGGAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 41027
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACT 11516
||||||||||||||||||| |||||||
Sbjct 41026 GCGTTATTAGCACGACGCTTCAACCAACT 40998
>seq429
Length=272324
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 15812 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 15871
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 15872 TGAGCTAATGGGCCG 15886
>seq357
Length=348683
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 332380 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACTCTCTAACCAAC 332439
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 332440 TGAGCTAATGGGCCG 332454
>seq3
Length=2764502
Score = 109 bits (120), Expect = 3e-19
Identities = 76/87 (87%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | | |||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1917079 AAAAAAAAAGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCA 1917020
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||||||||||||||||||||
Sbjct 1917019 GCTCTAACCAACTGAGCTAATGGGCCG 1916993
>seq120
Length=877290
Score = 102 bits (112), Expect = 4e-17
Identities = 80/95 (84%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495
||| ||| |||| || | |||||||||| ||||| |||| ||||||||||||||||
Sbjct 154762 AATAAATGCAAAAAGAATTGTGGCCCATGAGGGGATCAAACCCGCGACCTTCGCGTTATT 154703
Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| ||||| | |||||||||||||||||||||
Sbjct 154702 AGCACTACGCTTTAACCAACTGAGCTAATGGGCCG 154668
>seq260
Length=503819
Score = 95.1 bits (104), Expect = 6e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| |||||||||||||||||||||||||| || || ||
Sbjct 237058 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCGCTCACAAA 236999
Query 11515 CTGAGCTAATGGGCCGT 11531
|| |||| |||||| ||
Sbjct 236998 CTCAGCTCATGGGCTGT 236982
>seq72
Length=1153005
Score = 86.0 bits (94), Expect = 3e-12
Identities = 67/80 (84%), Gaps = 2/80 (3%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| |||| || ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 432981 AATACAAAAAGAAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 432922
Query 11499 ACGACGCTCTRACCAACTGA 11518
||||||| || |||||| ||
Sbjct 432921 ACGACGCCCTAACCAACCGA 432902
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261485482658344
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |