Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq379 116 2e-21 seq8 114 7e-21 seq560 113 2e-20 seq429 111 8e-20 seq357 111 8e-20 seq3 109 3e-19 seq120 102 4e-17 seq260 95.1 6e-15 seq72 86.0 3e-12 >seq379 Length=326478 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| || ||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 256737 AATATAAAAAGAAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 256796 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||||||||||||||||||||| Sbjct 256797 ACGACGCTCTAACCAACTGAGCTAATGGGCCG 256828 >seq8 Length=2356637 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 735334 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 735275 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 735274 TGAGCTAATGGGCCG 735260 Score = 113 bits (124), Expect = 2e-20 Identities = 80/91 (88%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||| | || | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 734304 TAATAAAAAGTAAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 734363 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 734364 CCGACGCTCCAACCAACTGAGCTAATGGGCC 734394 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 736147 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAAC 736088 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 736087 TGAGCTAATGGGCCG 736073 >seq560 Length=164154 Score = 113 bits (124), Expect = 2e-20 Identities = 78/88 (89%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 670 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCGCTCTAACCAAC 611 Query 11516 TGAGCTAATGGGCCGTCGACGAT-TGTG 11542 ||||||||||||||| || ||| |||| Sbjct 610 TGAGCTAATGGGCCGATGAAGATGTGTG 583 Score = 111 bits (122), Expect = 8e-20 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||| Sbjct 51284 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCCCGACGCTCTAACCAAC 51225 Query 11516 TGAGCTAATGGGCCGTCGACGAT 11538 ||||||||||||||| || ||| Sbjct 51224 TGAGCTAATGGGCCGATGAAGAT 51202 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| ||||| || |||| || | |||||||||| |||||||||| |||||||| Sbjct 41084 AAATATA-AATTA-TACAAAAGGAATTGTGGCCCATGAGGGGATCGAACCCGCGACCTTC 41027 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACT 11516 ||||||||||||||||||| ||||||| Sbjct 41026 GCGTTATTAGCACGACGCTTCAACCAACT 40998 >seq429 Length=272324 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 15812 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACACTCTAACCAAC 15871 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 15872 TGAGCTAATGGGCCG 15886 >seq357 Length=348683 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||| Sbjct 332380 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACTCTCTAACCAAC 332439 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 332440 TGAGCTAATGGGCCG 332454 >seq3 Length=2764502 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1917079 AAAAAAAAAGAGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCA 1917020 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 1917019 GCTCTAACCAACTGAGCTAATGGGCCG 1916993 >seq120 Length=877290 Score = 102 bits (112), Expect = 4e-17 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| ||| |||| || | |||||||||| ||||| |||| |||||||||||||||| Sbjct 154762 AATAAATGCAAAAAGAATTGTGGCCCATGAGGGGATCAAACCCGCGACCTTCGCGTTATT 154703 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||| | ||||||||||||||||||||| Sbjct 154702 AGCACTACGCTTTAACCAACTGAGCTAATGGGCCG 154668 >seq260 Length=503819 Score = 95.1 bits (104), Expect = 6e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| |||||||||||||||||||||||||| || || || Sbjct 237058 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCGCTCACAAA 236999 Query 11515 CTGAGCTAATGGGCCGT 11531 || |||| |||||| || Sbjct 236998 CTCAGCTCATGGGCTGT 236982 >seq72 Length=1153005 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/80 (84%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTG--GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| || ||| |||||||| |||||||||| ||||||||||||||||||| Sbjct 432981 AATACAAAAAGAAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 432922 Query 11499 ACGACGCTCTRACCAACTGA 11518 ||||||| || |||||| || Sbjct 432921 ACGACGCCCTAACCAACCGA 432902 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485482658344