Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1212 179 6e-41 seq216 179 6e-41 seq215 179 6e-41 seq447 176 7e-40 seq95 176 7e-40 seq3 116 6e-22 >seq1212 Length=14436 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 12611 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 12552 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 12551 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 12492 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 12491 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 12432 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 12431 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 12372 Query 16693 AAGTTAA 16699 ||||| Sbjct 12371 CGGTTAA 12365 >seq216 Length=582351 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 42662 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 42721 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 42722 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 42781 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 42782 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 42841 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 42842 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 42901 Query 16693 AAGTTAA 16699 ||||| Sbjct 42902 CGGTTAA 42908 >seq215 Length=584702 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 550524 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 550583 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 550584 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 550643 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 550644 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 550703 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 550704 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 550763 Query 16693 AAGTTAA 16699 ||||| Sbjct 550764 CGGTTAA 550770 Score = 176 bits (194), Expect = 7e-40 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 560022 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 560081 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 560082 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 560141 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 560142 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 560201 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 560202 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 560261 >seq447 Length=257201 Score = 176 bits (194), Expect = 7e-40 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 25890 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 25949 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 25950 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 26009 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 26010 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 26069 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 26070 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 26129 >seq95 Length=1020863 Score = 176 bits (194), Expect = 7e-40 Identities = 183/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||| ||||| || |||||||||||||| || || || Sbjct 422001 TCTTCGTGATAACATCCAGGGTATCACAAAGCCGGCCATCCGTCGTCTGGCACGCCGAGG 421942 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| |||| || || |||| || |||| ||||| ||| ||||| | || Sbjct 421941 CGGTGTCAAACGTATCTCCGGTCTGATCTACGAGGAGACTCGTGGTGTGCTGAAGGTGTT 421882 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || ||||||||||| || | ||||| || Sbjct 421881 CCTAGAGAACGTGATCCGTGACGCCGTCACGTACACCGAGCACGCCAAGAGGAAGACCGT 421822 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| ||||||| || |||||||||| || || | | || ||||| || Sbjct 421821 CACCGCCATGGACGTCGTCTACGCGCTGAAACGTCAGGGACGCACCCTGTACGGTTTCGG 421762 >seq3 Length=2764502 Score = 116 bits (128), Expect = 6e-22 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | | | |||||||| |||||||| || || ||||| || || || Sbjct 105040 CGCTAAGCGGCACAGAAAAGTACTTCGAGACAACATCCAGGGCATTACCAAACCTGCCAT 104981 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | |||| | | || || || || | | ||||| || |||||||||| | Sbjct 104980 CAGAAGATTGGCCAGAAGAGGAGGGGTGAAAAGGATATCTGGTTTAATCTATGAAGAAAC 104921 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | |||||||| |||| || ||| ||||| |||||| | ||||| || Sbjct 104920 GAGAGGAGTTTTGAAAGTCTTTCTGGAGAATGTTATAAGAGATGCTGTGACGTATACTGA 104861 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||| | ||||| ||||| | |||||| | || || || ||||| | ||||| Sbjct 104860 GCATGCTAAAAGGAAGACCGTCACGGCTATGGATGTAGTTTACGCGTTGAAGAGGCAAGG 104801 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||||||||| |||| Sbjct 104800 AAGAACGCTTTATGGTTTTGGAGGTTA 104774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073559733242