Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq997 192 2e-44 seq813 156 1e-33 seq1547 105 2e-18 seq1102 93.3 1e-14 >seq997 Length=29618 Score = 192 bits (212), Expect = 2e-44 Identities = 294/410 (72%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 43156 GCATGAATCTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGACA 43215 |||||||||| |||||| | || | ||||||||| ||||| || ||| | |||| Sbjct 23438 GCATGAATCTTGAAAATACTCTCAAATATCACTTCGCCAAATCGACAATGATTAGCGACT 23379 Query 43216 TCCCTCGCGCAACAGCTTCAGAAACGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 43275 || || |||| || ||||| | ||||| || || ||| | ||||| |||||||| | Sbjct 23378 CTCCCCGGACAACGGCATCAGATGCATTAACCGGAACGGATATCATGGCTGCTATGGGCA 23319 Query 43276 TGACTCAAAGTCGCGCCTCGTTGGGTTACAGCTCGTTTCTTGGGAAGATGGAAATCAGCA 43335 |||| || || ||| | ||||||||||| | ||||| |||||||||| ||||||| Sbjct 23318 TGACGCAGGAACGGGCCGCCATGGGTTACAGCGCTTTTCTCGGGAAGATGGGGATCAGCA 23259 Query 43336 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACTGCCTATGCTCTTAAGCACTGCGATA 43395 ||||||||| |||| || ||||| ||| | || ||||| || | | |||||| Sbjct 23258 ACAATGACCGGGAGAGGGCGATTGAGTTGCAGGCTCAGTATGCGCTGACTAAGTGCGATC 23199 Query 43396 AGGTTACTGCCTTACGTAAGCTCGAAAATGATATTAAGCCAAAGGTAATGCA--AGTTCT 43453 |||| | || ||||| ||||| | || ||||| ||| ||||||||| |||| Sbjct 23198 GGGTTGCGGCATTACGGAAGCTTAATGCAGAGATTAAACCACTGGTAATGCATCAGTTGG 23139 Query 43454 CGCAACATTCGCATTTGCTGACTATTCACGAAGCGCTGCCAGTACCAGAACC--TGTGAT 43511 | || | ||||| || | |||||||| || ||||| ||||| | ||| | |||||| Sbjct 23138 C-CAGC-TTCGCTTTCGAAGACTATTCCCGCAGCGCCGCCAG--CGTGAAACAGTGTGAT 23083 Query 43512 TGCTGCGGCGGG--AAGAAGTTTATCGATGCCGAGGTAATGACGATGAAA 43559 |||||| |||| ||| | || || || || || || | ||||||||| Sbjct 23082 TGCTGC-TCGGGTCAAGGA-TTCATTGAGGCTGATGTTTTCACGATGAAA 23035 Score = 127 bits (140), Expect = 6e-25 Identities = 255/382 (67%), Gaps = 10/382 (3%) Strand=Plus/Minus Query 45130 TGCGTCTGTCATTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGA 45189 |||| ||||| |||||||| | | |||| || | ||||| |||| || || || || Sbjct 18230 TGCG-CTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATTAACCACTATCGCGA 18172 Query 45190 TAACGCCATCGCCTACAAAGAGCAGCGCGATACCGTTACTCATAAGCTGACGCTGGCGAA 45249 ||||||||| ||||||||||||||||||||| | ||| | || || | | ||| || Sbjct 18171 CAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAACTCAGCCAGGCCAA 18112 Query 45250 CGCGACAATTACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATA 45309 ||| || || | |||||| || || |||||||||| || | || ||||| | ||| Sbjct 18111 CGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATA 18052 Query 45310 TATAAAGGAATTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTCNNNNN 45369 | ||| || |||||||||| | | ||| | ||| |||||| Sbjct 18051 CACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGC 17992 Query 45370 NNNNNNNNNNNNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAACAGGTAAATCCAC 45429 |||| ||||||| | ||||||| || ||| | | | || Sbjct 17991 TGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC-----GCGAACGG----AGCGAC 17941 Query 45430 CTCCGCCGCCAGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGA 45489 | | ||| | || ||| |||| ||| |||||||||| | ||||||||| ||||||| Sbjct 17940 CGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGA 17881 Query 45490 TTATTTCACCCTCAAAGAGCGA 45511 |||||||| ||||| | ||||| Sbjct 17880 TTATTTCATCCTCAGAAAGCGA 17859 Score = 91.5 bits (100), Expect = 4e-14 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 5 CAGGTCTGACAATAAAGCAAGAGGCTTTCTGTCAGGCATACATCGAAACGGGTAATGCTT 64 ||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||| Sbjct 16839 CAGGTCTGACAATTAAGCAAGAGGCTTTCTTTCTGGCACACATCGAAACGGGTAATGCTT 16780 >seq813 Length=55966 Score = 156 bits (172), Expect = 1e-33 Identities = 244/348 (70%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| || ||||| |||||||| || | |||| || | |||||||| ||| || || Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTAC---TT 13495 Query 32959 CTGTCCACTT---TGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTC 33015 || | | || || |||||| | || |||| || |||||| | ||| |||| Sbjct 13496 CTCAGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTG 13555 Query 33016 AGAGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACG 33075 ||| ||||| ||||||||||| | ||||| |||||||||||| || || |||||| || Sbjct 13556 AGAACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCG 13615 Query 33076 GTGCCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGT 33135 |||||| || |||||||| || ||| || || |||||| ||||| ||| || || Sbjct 13616 GTGCCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGT 13675 Query 33136 AGCTATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTG 33195 ||| | || | ||| || | || || || ||| | ||||||||||| || Sbjct 13676 AGCCAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTG 13735 Query 33196 TCCAACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 || | || | || ||||||||| |||||||||||||| ||||| Sbjct 13736 GCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783 >seq1547 Length=4346 Score = 105 bits (116), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 24488 ACCCATTGCCAGTTAAATGGATAGCCAGCGCGGTATTGCGTCTGATTGGCGACT----TT 24543 ||||| | |||||||||||| || || |||||||| || |||||||| ||| || Sbjct 287 ACCCAATTCCAGTTAAATGGGTAACCGGCGCGGTACTGGGTCTGATT----ACTTTGCTT 342 Query 24544 ACGCACTCCGTAAATCTGCACGGTAGTGTCCTGACCGCCAACCATTGCCTGAGCGGTGCA 24603 ||||||||||||||||| ||| | | ||||| ||||| | || ||| |||| || Sbjct 343 CCGCACTCCGTAAATCTGGACGATGTTCTCCTGTCCGCCGATCAGGGCCGTTCCGGTACA 402 Query 24604 AATCGGCTTCTGCTTTTCGAGAATGCCAGCGCACCCAGA 24642 || || | |||||| | |||| ||||||||| ||||| Sbjct 403 TATGGGATGCTGCTTCTGAAGAACGCCAGCGCAACCAGA 441 Score = 93.3 bits (102), Expect = 1e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22648 GAACGCGCTGGCGAACCACGGAACCGTTGAGCACCAGTATCAGCAATATGGGGAGGTTCG 22707 |||||| || |||||||||||||| || |||||||||| ||||| ||||| || || Sbjct 2299 GAACGCCCTTGCGAACCACGGAACTGTGGAGCACCAGTGGGCACAATACGGGGAAGTGCG 2240 Query 22708 CGCCGACATCCTTGTTGTGAAAACAACTGTCGCTACTGCCGAGCAGGGGCTCGCCGATCT 22767 ||||| ||||| ||||| ||||| || | ||| | || ||| | ||||| || Sbjct 2239 TGCCGATATCCTGGTTGTAAAAACGACGATTGCTGAAGTTGATAAGGCAATGGCCGAACT 2180 Query 22768 TTCCACTTACGTACAGGCACAAATAG 22793 ||| || | |||||||| || |||| Sbjct 2179 TTCGACGCAGGTACAGGCGCAGATAG 2154 >seq1102 Length=22075 Score = 93.3 bits (102), Expect = 1e-14 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 26342 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAA 26397 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAA 2219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149955205323736