Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_006949.1
Length=46900
Score E
Sequences producing significant alignments: (Bits) Value
seq997 192 2e-44
seq813 156 1e-33
seq1547 105 2e-18
seq1102 93.3 1e-14
>seq997
Length=29618
Score = 192 bits (212), Expect = 2e-44
Identities = 294/410 (72%), Gaps = 12/410 (3%)
Strand=Plus/Minus
Query 43156 GCATGAATCTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGACA 43215
|||||||||| |||||| | || | ||||||||| ||||| || ||| | ||||
Sbjct 23438 GCATGAATCTTGAAAATACTCTCAAATATCACTTCGCCAAATCGACAATGATTAGCGACT 23379
Query 43216 TCCCTCGCGCAACAGCTTCAGAAACGTTAACTGGCACTGATGTTATGGCAGCTATGGGTA 43275
|| || |||| || ||||| | ||||| || || ||| | ||||| |||||||| |
Sbjct 23378 CTCCCCGGACAACGGCATCAGATGCATTAACCGGAACGGATATCATGGCTGCTATGGGCA 23319
Query 43276 TGACTCAAAGTCGCGCCTCGTTGGGTTACAGCTCGTTTCTTGGGAAGATGGAAATCAGCA 43335
|||| || || ||| | ||||||||||| | ||||| |||||||||| |||||||
Sbjct 23318 TGACGCAGGAACGGGCCGCCATGGGTTACAGCGCTTTTCTCGGGAAGATGGGGATCAGCA 23259
Query 43336 GCAATGACCGTGAGAAAGCTATTGAACTGCTGACTGCCTATGCTCTTAAGCACTGCGATA 43395
||||||||| |||| || ||||| ||| | || ||||| || | | ||||||
Sbjct 23258 ACAATGACCGGGAGAGGGCGATTGAGTTGCAGGCTCAGTATGCGCTGACTAAGTGCGATC 23199
Query 43396 AGGTTACTGCCTTACGTAAGCTCGAAAATGATATTAAGCCAAAGGTAATGCA--AGTTCT 43453
|||| | || ||||| ||||| | || ||||| ||| ||||||||| ||||
Sbjct 23198 GGGTTGCGGCATTACGGAAGCTTAATGCAGAGATTAAACCACTGGTAATGCATCAGTTGG 23139
Query 43454 CGCAACATTCGCATTTGCTGACTATTCACGAAGCGCTGCCAGTACCAGAACC--TGTGAT 43511
| || | ||||| || | |||||||| || ||||| ||||| | ||| | ||||||
Sbjct 23138 C-CAGC-TTCGCTTTCGAAGACTATTCCCGCAGCGCCGCCAG--CGTGAAACAGTGTGAT 23083
Query 43512 TGCTGCGGCGGG--AAGAAGTTTATCGATGCCGAGGTAATGACGATGAAA 43559
|||||| |||| ||| | || || || || || || | |||||||||
Sbjct 23082 TGCTGC-TCGGGTCAAGGA-TTCATTGAGGCTGATGTTTTCACGATGAAA 23035
Score = 127 bits (140), Expect = 6e-25
Identities = 255/382 (67%), Gaps = 10/382 (3%)
Strand=Plus/Minus
Query 45130 TGCGTCTGTCATTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGA 45189
|||| ||||| |||||||| | | |||| || | ||||| |||| || || || ||
Sbjct 18230 TGCG-CTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATTAACCACTATCGCGA 18172
Query 45190 TAACGCCATCGCCTACAAAGAGCAGCGCGATACCGTTACTCATAAGCTGACGCTGGCGAA 45249
||||||||| ||||||||||||||||||||| | ||| | || || | | ||| ||
Sbjct 18171 CAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAACTCAGCCAGGCCAA 18112
Query 45250 CGCGACAATTACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATA 45309
||| || || | |||||| || || |||||||||| || | || ||||| | |||
Sbjct 18111 CGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATA 18052
Query 45310 TATAAAGGAATTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTCNNNNN 45369
| ||| || |||||||||| | | ||| | ||| ||||||
Sbjct 18051 CACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGC 17992
Query 45370 NNNNNNNNNNNNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAACAGGTAAATCCAC 45429
|||| ||||||| | ||||||| || ||| | | | ||
Sbjct 17991 TGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC-----GCGAACGG----AGCGAC 17941
Query 45430 CTCCGCCGCCAGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGA 45489
| | ||| | || ||| |||| ||| |||||||||| | ||||||||| |||||||
Sbjct 17940 CGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGA 17881
Query 45490 TTATTTCACCCTCAAAGAGCGA 45511
|||||||| ||||| | |||||
Sbjct 17880 TTATTTCATCCTCAGAAAGCGA 17859
Score = 91.5 bits (100), Expect = 4e-14
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 5 CAGGTCTGACAATAAAGCAAGAGGCTTTCTGTCAGGCATACATCGAAACGGGTAATGCTT 64
||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 16839 CAGGTCTGACAATTAAGCAAGAGGCTTTCTTTCTGGCACACATCGAAACGGGTAATGCTT 16780
>seq813
Length=55966
Score = 156 bits (172), Expect = 1e-33
Identities = 244/348 (70%), Gaps = 6/348 (2%)
Strand=Plus/Plus
Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958
||| || ||||| |||||||| || | |||| || | |||||||| ||| || ||
Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTAC---TT 13495
Query 32959 CTGTCCACTT---TGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTC 33015
|| | | || || |||||| | || |||| || |||||| | ||| ||||
Sbjct 13496 CTCAGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTG 13555
Query 33016 AGAGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACG 33075
||| ||||| ||||||||||| | ||||| |||||||||||| || || |||||| ||
Sbjct 13556 AGAACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCG 13615
Query 33076 GTGCCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGT 33135
|||||| || |||||||| || ||| || || |||||| ||||| ||| || ||
Sbjct 13616 GTGCCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGT 13675
Query 33136 AGCTATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTG 33195
||| | || | ||| || | || || || ||| | ||||||||||| ||
Sbjct 13676 AGCCAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTG 13735
Query 33196 TCCAACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243
|| | || | || ||||||||| |||||||||||||| |||||
Sbjct 13736 GCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783
>seq1547
Length=4346
Score = 105 bits (116), Expect = 2e-18
Identities = 119/159 (75%), Gaps = 8/159 (5%)
Strand=Plus/Plus
Query 24488 ACCCATTGCCAGTTAAATGGATAGCCAGCGCGGTATTGCGTCTGATTGGCGACT----TT 24543
||||| | |||||||||||| || || |||||||| || |||||||| ||| ||
Sbjct 287 ACCCAATTCCAGTTAAATGGGTAACCGGCGCGGTACTGGGTCTGATT----ACTTTGCTT 342
Query 24544 ACGCACTCCGTAAATCTGCACGGTAGTGTCCTGACCGCCAACCATTGCCTGAGCGGTGCA 24603
||||||||||||||||| ||| | | ||||| ||||| | || ||| |||| ||
Sbjct 343 CCGCACTCCGTAAATCTGGACGATGTTCTCCTGTCCGCCGATCAGGGCCGTTCCGGTACA 402
Query 24604 AATCGGCTTCTGCTTTTCGAGAATGCCAGCGCACCCAGA 24642
|| || | |||||| | |||| ||||||||| |||||
Sbjct 403 TATGGGATGCTGCTTCTGAAGAACGCCAGCGCAACCAGA 441
Score = 93.3 bits (102), Expect = 1e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 22648 GAACGCGCTGGCGAACCACGGAACCGTTGAGCACCAGTATCAGCAATATGGGGAGGTTCG 22707
|||||| || |||||||||||||| || |||||||||| ||||| ||||| || ||
Sbjct 2299 GAACGCCCTTGCGAACCACGGAACTGTGGAGCACCAGTGGGCACAATACGGGGAAGTGCG 2240
Query 22708 CGCCGACATCCTTGTTGTGAAAACAACTGTCGCTACTGCCGAGCAGGGGCTCGCCGATCT 22767
||||| ||||| ||||| ||||| || | ||| | || ||| | ||||| ||
Sbjct 2239 TGCCGATATCCTGGTTGTAAAAACGACGATTGCTGAAGTTGATAAGGCAATGGCCGAACT 2180
Query 22768 TTCCACTTACGTACAGGCACAAATAG 22793
||| || | |||||||| || ||||
Sbjct 2179 TTCGACGCAGGTACAGGCGCAGATAG 2154
>seq1102
Length=22075
Score = 93.3 bits (102), Expect = 1e-14
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 26342 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAA 26397
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAA 2219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149955205323736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |