Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_006953.1 Length=37966 Score E Sequences producing significant alignments: (Bits) Value seq997 206 6e-49 >seq997 Length=29618 Score = 206 bits (228), Expect = 6e-49 Identities = 575/877 (66%), Gaps = 16/877 (2%) Strand=Plus/Minus Query 10049 AGCATGGTCAGGCTGCATACTTAAAACTACCCAAGTAAGGAATTAGCAAATGGCTACTAC 10108 ||||||| ||| || | | | ||||| || || ||||| |||| | ||| |||| || Sbjct 9746 AGCATGGCCAGCAGGCCTTCCTCAAACTTCCGAAATAAGGGATTAACCCATGTCTACCAC 9687 Query 10109 AGTAAACTCTGATTTAGTAATCTACAACGATACAGCCCAGACTGCGTACCTAGAGCGCAA 10168 || || ||| | | || || |||| || ||||| || | || |||||| Sbjct 9686 TGTTAATAGTGACCTGATCATTTATGACGACCTGGCGCAGACCGCTTTTCTCGAGCGCCG 9627 Query 10169 CATGGACAACCTAGCTGTGTTCAACGAAAACTCACGCGCTGCAATTGGCCT---TAACTC 10225 ||||||||| ||| | ||||||| ||| || ||| || || |||| Sbjct 9626 TCAGGACAACCTGGCTATTTTCAACGCGTCCTCCAACGGTGCGATCCTGCTGGATAAC-- 9569 Query 10226 TGAGCTAATCGAAGGCGACTTGAAGCTA-CGTTCATTCTACAAAGTGGGCGGCGCTATCG 10284 ||||| || |||||||| || || | || | |||||||||||||||||| | |||| Sbjct 9568 -GAGCTGATTGAAGGCGATTTCC-GCAAGCGAGCCTTCTACAAAGTGGGCGGCTCAATCG 9511 Query 10285 CTGACCGTGATGTGAATTCAACGGCTACCGTTGCAGGTACTAAGATTGCAGCGGATGAAA 10344 ||||| || || || || | || || | |||| ||||||| || | |||| Sbjct 9510 AATCGCGTGACGTTAACTCCACCGATAAAGTGACGGGTAAGAAGATTGGCGCCGGTGAAG 9451 Query 10345 TGGTATCAGTGAAAGTGCCTTGGAAATATGGCCCATACGAAACCACAGAAGAAGCATTCA 10404 ||||| || |||| || |||||||| || ||||||||||| || |||||||| |||| Sbjct 9450 CCGTATCCGTCAAAGCACCGTGGAAATACGGTCCATACGAAACTACTGAAGAAGCGTTCA 9391 Query 10405 AGCGTCGCGCACGCTCTCCTGAAGAGTTCTCTATGCTAATCGGTCAAGATATGGCTGACG 10464 | || |||| ||||| ||| |||||||| | ||||| ||| ||||||||| Sbjct 9390 AACGCCGCGGCCGCTCGGTTGATGAGTTCTCAGAAGTGATCGGCACTGATGTGGCTGACG 9331 Query 10465 CAACTATGGCTGGCTGGATTGGCTACGCACTAAACGCACTGCAAGGTGCGATTGGCTCTA 10524 | || ||| |||| | |||| | || || ||| | || |||||| | | Sbjct 9330 CTACGCTGGAAGGCTACGTGAAATACGGCTTGAAGGCCCTGACGGCAGCAATTGGCGCCA 9271 Query 10525 ACGCTGGCATGAATGTGTCTGGTGAGCTTGCAACCGAAGGTAAGAAGGTTCTTACTAAAG 10584 |||| | ||| || ||| || ||| ||||| ||||||||| || || | Sbjct 9270 ACGCGGATATGGTGGTCACTGCAGACATTGAGACCGACGGTAAGAAGACCCTGACACGTG 9211 Query 10585 GTTTGCGCACAATGGGCGACAAAGCGTCATC--TATCGCTATTTGGGTGATGGATTCAAC 10642 | |||| | |||||||| ||| | | ||| | | || ||| | || | Sbjct 9210 GCCTGCGTAAGTACGGCGACAA--GTTCAACCGTGTCGTGCTCTTCGTTATGCACTCCGC 9153 Query 10643 GTCTTACTTCGACATCGTTGATGAAGCTATCGACAACAAGCTTTATGAAGAAGCTGGTGT 10702 | |||||||||||||| ||||| || |||| |||||| | || |||||||| || || Sbjct 9152 TACCTACTTCGACATCGTGGATGAGGCGATCGCCAACAAAATCTACGAAGAAGCGGGCGT 9093 Query 10703 TGTGGTTTACGGTGGCACA-CCNNNNNNNNNNNNNNNNNNNGTGCTTGTTACTGA-CCAA 10760 ||||||||||| || ||| || ||||| ||||| || | | Sbjct 9092 AGTGGTTTACGGCGG-ACAGCCGGGCACCCTGGGTAAACCGGTGCTGGTTACCGATACCA 9034 Query 10761 TGTCCAGCAACTAAGATTTTCGGTCTTGTGGCTGGCGCGGTAATGATTACTGAGTCCCAA 10820 || | || | ||| | || || ||||| || || || | | |||||||| || Sbjct 9033 TGGAC-GCTGATGCGATCCTTGGGCTGGTGGCCGGGGCAGTGACTGTAACTGAGTCTCAG 8975 Query 10821 GCACCTGGTATGCGTTCTTACCAAATCGACGACCAAGAAAACTTGGCTATTGGTTTCCGT 10880 || || || | ||||| ||| | ||| |||| || |||||| |||| || || | |||| Sbjct 8974 GCTCCGGGGTTCCGTTCATACGACATCAACGATCAGGAAAACCTGGCAATCGGCTACCGT 8915 Query 10881 GCTGAGGGTACGGCTAACGTTGAAGTTCTTGGTTACA 10917 ||||| || || || || || | || ||||||| Sbjct 8914 GCTGAAGGCGTGGTGAATGTCGATTTGCTGGGTTACA 8878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121367014372384