Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq65 84.2 2e-11 >seq65 Length=1244346 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 |||||||||||||||| ||| || || || || || |||||||| || ||||| || || Sbjct 630964 TACATTTCAGAATGTACATTCTCCATGGCGATTTGGAATCCGTAGAAGCATCTAGCTTCA 630905 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | ||| || || | || | || | | ||| ||||| || || |||||| Sbjct 630904 GTCACTTGCACTTCCTGGGAGAACCTTTCCACAAGGTTCTCATTAACAATCCCATCAGAA 630845 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || ||||| |||||||| | || ||| ||||||| | ||| ||| | | ||| | Sbjct 630844 GCAGCAAAGAATGCCAAGACATGTTTGATAAAATGCCTTTCACAGTCTTTCAGGCTTTCC 630785 Query 21950 CAATCTAATAAATC 21963 |||||| ||| ||| Sbjct 630784 CAATCTGATAGATC 630771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 ||| | ||||| |||| || || |||||||| || || | |||||||| | | Sbjct 631703 AATACCAACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCC 631645 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGG 21608 |||||||||| | ||| || || || || || || || ||||| ||||||||||| | Sbjct 631644 CTCTCTTTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTG 631585 Query 21609 CAGCAAATGCAACTAATCGTTCACCGTATGT 21639 | || ||||| |||| || ||||||| |||| Sbjct 631584 CCGCGAATGCTACTATTCTTTCACCGAATGT 631554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888872124560