Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq974 178 1e-39 seq962 158 1e-33 seq236 150 2e-31 seq637 109 6e-19 seq754 87.8 2e-12 >seq974 Length=31311 Score = 178 bits (196), Expect = 1e-39 Identities = 253/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 41800 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 41859 |||||||| || ||| |||| ||||| || || || |||||||| | |||||| || Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 41860 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGTAT 41919 || || | ||||| |||| ||| | || || || || |||||||| || Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAATAC 237 Query 41920 ATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAA 41979 |||| || || || |||||||| | || || || | ||| || || |||| Sbjct 236 GTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCG 177 Query 41980 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACA 42039 || || || ||||||||| | || || ||| |||||||||| || || | ||||| Sbjct 176 ATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACG 117 Query 42040 GCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCG 42099 ||||| |||||||| || || || ||||| || || |||||||| || ||| || || Sbjct 116 GCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCT 57 Query 42100 ATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGA 42155 || ||||| ||||||| |||| ||||||||| |||||||||||| |||||||| Sbjct 56 ATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq962 Length=32987 Score = 158 bits (174), Expect = 1e-33 Identities = 1006/1586 (63%), Gaps = 73/1586 (5%) Strand=Plus/Minus Query 155729 CAACGAGAACGCGAACAAACACGCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGG 155788 ||| || ||||| |||||| || | || |||| || |||||| || ||||||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 155789 TATTGTAGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCA 155848 ||| || || || || | |||||| | || | || ||| || | || |||||| Sbjct 25681 TATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCA 25622 Query 155849 TGACTCCGGCGACATCCACTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 155907 || ||| || ||||||||||| ||||| || || |||||| || || ||| Sbjct 25621 CGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 25562 Query 155908 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 155967 ||| ||| | || ||||||| |||||| | | || || || ||||||||||| | Sbjct 25561 -CTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCG 25503 Query 155968 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156027 | || ||||| || ||||| ||| || ||||| | | ||||||||| | ||| | Sbjct 25502 AGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCC 25443 Query 156028 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156085 || | || ||| |||||||| || ||| || || || | || |||||||||| Sbjct 25442 AGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGGC 25385 Query 156086 TCCGTATGCAGAAATGACATATGAA-AAGCATGTTAAGGATGCTAAAAAGTATAAAATTT 156144 |||| || || | | || ||||| || || || ||| | || Sbjct 25384 CCCGTTTG-TGACCGCAAGCTTCAACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATCC 25326 Query 156145 CGTTAGATCGTAC--ATATGCGATGGAAAAGACTGAAAAAGATGTG-TTTGATGCTTTCC 156201 || | | || |||||| ||||| ||||| ||| | ||| || |||| Sbjct 25325 CGGACG--CCGACGGCTATGCGCACTCGCGCACTGAGAAAGA-GTGCTATGACGCGTTCC 25269 Query 156202 AATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTTA 156261 | ||| || || || || || || |||||||| |||||||| || || || || || | Sbjct 25268 AGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTGA 25209 Query 156262 CTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGGATGATCCAGAAAGCTAT 156316 | | ||| || || || |||||| || |||||||| | | || Sbjct 25208 CCTTCGGTTTTGGCCTGGGCACCAGCTGGGAAT-----CGCGTTTGATCCAGCAGTCCAT 25154 Query 156317 TCTGAAAAACCGTATCCGTGGCCTGGGTAAAAAAGGTATTACTCCGGTATTCCCTAAACT 156376 ||| ||||||||| ||||| ||||| || | | || |||| ||||| ||||| Sbjct 25153 CCTGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACT 25094 Query 156377 GGTTATGTTCATGGAAAAAGGCATTAACCTTGATCCAGAGGATCGCAACTATGACATCAA 156436 ||| | ||| | || | |||| | | |||| || || |||||||| Sbjct 25093 GGTATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAA 25034 Query 156437 ACAACTGGCTCTGGAATGCGCTTCAAAACGTATGTACCCAGATATCATTAGTGCATATAA 156496 ||| ||||| ||||| ||||| || || |||||||| ||||| | | || | Sbjct 25033 ACAGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGA---ACTACGA 24977 Query 156497 TAACCGTCGCA----TCACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTT 156552 | | |||| | | || || | | || | | | || |||||||| ||||| | Sbjct 24976 TCA-GGTCGTAAAAGTAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCT 24924 Query 156553 TCCTTAGTGTGTGGCATGATGATAACGGTAATGAAGTTCTGGATGGACGTAATAACCTGG 156612 |||| | || | | ||||| ||||| | | | | || || ||||| ||||| | Sbjct 24923 TCCTCGGCGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCG 24864 Query 156613 GTGTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAATCGCAGGAAGATGAAG 156672 | || | | | ||||| ||||| || || || || || ||| ||| |||||| Sbjct 24863 GCGTCATCAGCCTGAACCTGCCGCGCATCGCGCTGGAGGC-CAAAGGCA-----ATGAAG 24810 Query 156673 ACGCACATGACGCATTCTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAA-GCC 156731 ||| ||||||| | || |||||||| ||| | ||| || || || Sbjct 24809 ------CTGA---ATTCTGGACACTGCTGGATGAACGCCTGCAGCTG-GCGCGCAAGGCG 24760 Query 156732 CTGATGACTCGCATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGTAC 156791 |||||||| || |||| |||| || || |||||| | || || || ||||| || Sbjct 24759 CTGATGACCCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTAT 24700 Query 156792 ACGGAAGGTGCATTCGGTGTTCGTCTGAATCCTGATGATGAAATCCTGGAACTGTTCAAA 156851 | |||||| || | ||| || || ||||| | || ||||| || || | |||||| Sbjct 24699 ATGGAAGGGGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCTGAGATCTTCAAA 24640 Query 156852 AATGGGCGTAGCTCTATCAGTCTGGGTTATATCGGATTGCATGAAACGCTGTTAATGTTC 156911 || || || || || ||||| |||||||| | ||||||| | |||||| | Sbjct 24639 AACGGCCGCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAA--CCATTAATGCCC 24582 Query 156912 -GGCT-CCGGTCAACATCCGTTCGATCG-TATTGGCT--CTCAAAATGTGGGTAAACTGA 156966 | || ||| ||| || || | | ||| | |||| | | || || Sbjct 24581 TGTCTGGCGGCACGCATATGTATGACAGCGACGCGCTACGTGAAAAAG-GCGT--GGCGA 24525 Query 156967 TTCTGGAATATCTACGC---GCCGCGACCGAGGCATGGAAAAAGAAAACTGGATTTGGTT 157023 || | | || ||| |||| | | || |||||| || |||| || | |||| Sbjct 24524 TTGTTCAGCGCCTGCGCGATGCCGTGGACCAG---TGGAAAGAGGAAACCGGCTACGGTT 24468 Query 157024 TCAGTCTGTATTCAACCCCTGCCGAATCTCTCTGCCATCGCTTCTGTAAGCTGGACTTTG 157083 |||| ||||| ||||| ||| || ||| | |||||||| |||||| | Sbjct 24467 TCAGCCTGTACAGTACCCCAAGCGAGAACCTGTGCGACCGCTTCTGCCGTCTGGACACCG 24408 Query 157084 AGAAGTTCGGGAGTGTGAAAGGGATCACGGATAAAGGCTGGTACACAAACAGTTTCCATC 157143 ||||||| | ||| |||| | || |||||||| | ||||| ||||| ||||| | Sbjct 24407 CCGAGTTCGGCATCGTGGAAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACC 24348 Query 157144 TGGACGTAGACCGCACAGTGACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATT 157203 | ||||| || | || | |||| ||| || ||||||| |||||| | |||| Sbjct 24347 TCGACGTGGAGAAGAAGGTAAACCCGTACGACAAGATCGACTTTGAAGCGGCGTATCCGC 24288 Query 157204 ACATTG-CATCTGCTGGTCATATCAGTTATGTCGAATTCCCTGATATGAAAAACAACCTG 157262 || | || | || || ||| | || | ||| | ||| | || | |||||||| Sbjct 24287 CGATCGCCAACGGC-GGCTTCATCTGCTACGGCGAGTACCCGAACATTCAGCACAACCTG 24229 Query 157263 CAAGCCCTGGAAAAAGTCTGGGATTA 157288 | || |||||| | || |||||||| Sbjct 24228 AAGGCGCTGGAAGACGTGTGGGATTA 24203 >seq236 Length=545527 Score = 150 bits (166), Expect = 2e-31 Identities = 145/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51920 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 51979 || |||||||| |||||||| ||||| || || || || |||||||| ||| || || Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 51980 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 52039 || | || || || || ||||| ||| | || || ||||| || |||||||| || ||| Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 52040 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 52099 || || | ||||| |||||||| ||||||||||||||||| | |||||||| |||||| Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 52100 ATGTAA 52105 ||||| Sbjct 30890 CTGTAA 30895 >seq637 Length=122170 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 51923 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 51982 |||||||| |||||||| |||||||| || | || |||| ||| ||||| || Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229 Query 51983 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 52042 ||||||||||||| || || ||| | || ||||| || || || || ||||| || ||| Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169 Query 52043 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 52102 || | |||||| |||||| |||| ||||||||| || | || || || | |||| Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109 Query 52103 TAA 52105 ||| Sbjct 107108 TAA 107106 >seq754 Length=71200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 40680 AACGAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTT 40739 ||| | ||||||| | |||||| ||| | ||||| |||||||| |||||| | Sbjct 66364 AACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGCCTGGAACGTCGGC 66423 Query 40740 GATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAAC 40799 || ||||| |||||||| || ||||| ||| |||||||||||| ||| || Sbjct 66424 GAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGTTCTTCCAGTTCTACGTCGCTGAC 66483 Query 40800 GGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTC 40859 || || || || ||| || |||||||| |||||| ||| | || ||||||| Sbjct 66484 GGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTT 66543 Query 40860 AATATCGCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTA 40919 || || ||| ||| || || | ||||| || || | || | ||||| Sbjct 66544 AACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTG 66603 Query 40920 GGTGATCTGGTTTGGACAGGTGGTGATGTCCATATCTACAAAAACGCAATCGAGCA 40975 || ||| | || ||||| ||||| || |||| |||||| ||| || ||||| Sbjct 66604 GGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCA 66659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577459050190400