Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq197 95.1 1e-14 seq11 95.1 1e-14 seq1030 84.2 2e-11 >seq197 Length=620651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | || ||||| | |||||| | ||| | ||| | Sbjct 447876 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTCA 447817 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| || || || |||||||| ||| Sbjct 447816 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAA 447757 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || ||||| || || |||| | | | | | |||||| ||| Sbjct 447756 CAGCGTCTCATCTTCGCTGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAAC 447697 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| ||||||| || || | || | ||||| Sbjct 447696 ATTCAGAAGGAGTCTACCCTCCATCTTGTTTTGCGTCTGCGCGGAGG 447650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | ||||| | ||| | ||| | Sbjct 447388 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAAGCTTCA 447329 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | |||||| ||||| |||||||| || || || || || || Sbjct 447328 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 447269 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||||| || || ||||| | | | | | |||||| ||| Sbjct 447268 CAGAGGTTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGCACCTTGTCCGACTACAAC 447209 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||||||||| ||||||| || || | || ||||||| Sbjct 447208 ATCCAGAAAGAATCTACCCTCCATCTTGTTTTGCGTCTGCGAGGAGG 447162 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||||| || | ||||| | ||| | ||| | Sbjct 446932 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACAATCACTCTGGAAGTTGAAGCTTCA 446873 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 446872 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAG 446813 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAACGTCAGCGACTATA 26946 || |||| || | || ||| |||||||| ||||| | | | |||| ||||||| Sbjct 446812 CAGCGACTTATCTTCGCCGGTAAACAACTAGAAGACGGCCGTACATTGTCA--GACTATA 446755 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGT 26977 | || || ||||| || ||| | || |||| Sbjct 446754 ATATCCAGAAAGAGTCGACTCTTCACTTGGT 446724 >seq11 Length=2281484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 71669 CAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATT 71728 ||||| || || || |||||||| |||| ||| ||| || || ||||| || Sbjct 1513533 CAAACTCACGACGAGCTATGGAACTCTGCGCAGATACAACTGGTGAAGGAGGGCAAGCAA 1513474 Query 71729 CACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAG 71788 ||||| | ||| ||||||||||||||||| ||||| || |||||||| | | ||| || Sbjct 1513473 CACGGCTTCCTGCGCATGTACTGGGCCAAGAAGATACTAGAGTGGACGCCCAGTCCTGAA 1513414 Query 71789 CAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCT 71848 | || || | || || || || || || || ||||| | ||||| | ||| || Sbjct 1513413 GATGCCCTGAAATACTCCATATACCTGAATGACCACTACAGCATAGACGGCAGGGATTCT 1513354 Query 71849 AACGGTTATGTCGGT 71863 || || ||||||||| Sbjct 1513353 AATGGATATGTCGGT 1513339 >seq1030 Length=27445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 ||||| ||||| | || || || || | || || || | |||||| | || | || Sbjct 2906 AACAATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAG 2847 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | |||||||||||| | |||||| ||||| ||||| || || || || || Sbjct 2846 GCTTCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCG 2787 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || || || |||| || | || || ||||| || || |||| | | | | |||| Sbjct 2786 GACCAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGAC 2727 Query 26943 TATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || ||||| || || |||||||| | || |||| |||| ||||||||||| || Sbjct 2726 TACAACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAGGCTTAGAGGAGGTAA 2671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478651665995680