Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq486 183 8e-41 >seq486 Length=217039 Score = 183 bits (202), Expect = 8e-41 Identities = 567/863 (66%), Gaps = 12/863 (1%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || | || || ||||| || | || | || Sbjct 176524 GAGCGGCCGCAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATCGAC 176465 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAA 363565 ||||| || || || || || || | | | ||| ||||||||||||| || | Sbjct 176464 GCCGCCATCACCACCTACAACCTGCTC--TCCGAGAAGTACTTCACGCACGCCAGCCCCA 176407 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | ||| | || | || | || ||| | || || || || || | |||| Sbjct 176406 CCCTGTTCTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGA 176347 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| |||||| ||||||| ||||| || ||| | ||||| | || ||||| Sbjct 176346 AGGACGACAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAAT 176287 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGT-TC-GTGCACAGAACAGTTACATTCG 363743 || ||||| || || || || || || || || | || | || ||||| || Sbjct 176286 CCGCGGGCGGCATAGGAGT-TC-ATGTTCATTGCATCAGAGCGAAAGGCACCTACAT-CG 176230 Query 363744 CGG-CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||| ||| || ||| || |||||||| |||||||| || |||| |||| || | Sbjct 176229 CGGGCACGAACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGG 176170 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || | ||||| |||||||| || ||||| || || || || | || ||||||| Sbjct 176169 CGCGCTACGTGGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGC 176110 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || || || || ||||| || || | ||| |||||||| ||||||||| Sbjct 176109 CGTGGCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAAAGAGGAAG 176050 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 |||| || || || ||||||||||| || ||| | || || | || |||||| | || | Sbjct 176049 TGCGCGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTG 175990 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 || || | ||| || | ||||| ||||| | || || | | ||| | Sbjct 175989 AGAACAACGAGGAGTGGAGCCTTATGTGCCCTCACGACAGCCCTGGCTTGGCTGATTGTT 175930 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 |||| || || | || ||| |||| | || |||||| || || ||| | || | | Sbjct 175929 GGGGAGATGAATTTGATGCATTATATCAGAAATATGAACAAGAAGG-TAGGTTTGTTAAA 175871 Query 364103 CAATTCC-CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || ||| ||| || | |||||| || || || || | || | ||||| ||||| Sbjct 175870 AAAGTCCGCGCTCAAATCCTATGGAAGGCTATTATTGAGGCACAAGTAGAGACTGGAACT 175811 Query 364162 CCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 || || ||| | ||||||||| | |||||| | ||| ||| || || | | || || Sbjct 175810 CCATACATGCTTTACAAAGATGCATGCAACAGAAAGAGCAATCAAAAGAATTTGGGAACC 175751 Query 364222 ATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCC 364281 || | ||||| ||||| || |||||| |||| ||||| || | || || || Sbjct 175750 ATCAAATGCAGCAATCTATGCACGGAGATTGTTGAGTACACATCTGCTGATGAAGTAGCT 175691 Query 364282 GTATGTAACCTTGCGTCGATCGC 364304 || || ||| | ||||| || || Sbjct 175690 GTTTGCAACTTGGCGTCAATTGC 175668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303323641602908