Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1030 96.9 3e-15 seq197 96.9 3e-15 seq486 84.2 2e-11 >seq1030 Length=27445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| ||||| | || || || || | || || || | || ||| | || || ||| Sbjct 2906 AACAATATGCAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAG 2847 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 || |||||||||||| | |||||| ||||| ||||| || || || || || Sbjct 2846 GCTTCCGACACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCG 2787 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 || || ||| ||||||| | || || || || || || |||| | | | | | ||| Sbjct 2786 GACCAGCAGCGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGAC 2727 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || |||||||| |||| || ||||| || | |||||||| Sbjct 2726 TACAACATCCAGAAGGAATCTACCCTTCACTTGGTGTTGAGGCTTAGAGGAGG 2674 >seq197 Length=620651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || ||| | |||||||| || Sbjct 446704 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTAGAAGTCGAAGCTTCA 446645 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 446644 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 446585 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || ||||| || ||||| | | | | | | || || ||| Sbjct 446584 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 446525 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || ||||| ||||| | || ||| || | |||||||| Sbjct 446524 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGGA 446477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || ||| | |||||||| || Sbjct 448332 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAAGCTTCA 448273 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| ||||| || || Sbjct 448272 GACACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAG 448213 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || ||||| || ||||| | | | | | | || || ||| Sbjct 448212 CAGCGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAAC 448153 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || ||||| ||||| | || ||| || | |||||||| Sbjct 448152 ATCCAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGAGGAGGA 448105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || || | ||||| || || Sbjct 447388 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAAGCTTCA 447329 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| ||||| |||||||| || || || || || || Sbjct 447328 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 447269 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | |||||||| || ||||| | | | | | | ||| || ||| Sbjct 447268 CAGAGGTTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGCACCTTGTCCGACTACAAC 447209 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||||||||| | ||| | || || | || ||||||| Sbjct 447208 ATCCAGAAAGAATCTACCCTCCATCTTGTTTTGCGTCTGCGAGGAGG 447162 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||||| || | || || | ||||| || || Sbjct 446932 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACAATCACTCTGGAAGTTGAAGCTTCA 446873 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| |||||||| || Sbjct 446872 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAG 446813 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 ||| |||| || | || ||| || ||||| ||||| | | | | |||| || |||| Sbjct 446812 CAGCGACTTATCTTCGCCGGTAAACAACTAGAAGACGGCCGTACATTGTCA--GACTATA 446755 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 | || || ||||| || || |||| || || || Sbjct 446754 ATATCCAGAAAGAGTCGACTCTTCACTTGGTATT 446721 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||||| || | || || | ||||| || || Sbjct 449089 ATGCAGATTTTCGTGAAAACCCTAACTGGCAAGACAATCACTCTGGAAGTGGAAGCTTCA 449030 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| |||||||| || Sbjct 449029 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAG 448970 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| |||| || | || ||| || ||||| ||||| | | | | | || ||||| Sbjct 448969 CAGCGACTTATCTTCGCCGGTAAACAACTAGAAGACGGCCGTACATTGTCTGACTATAAT 448910 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||| || || |||| || || || Sbjct 448909 ATCCAGAAAGAGTCAACCCTTCACTTGGTATT 448878 >seq486 Length=217039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || |||||||| |||| ||| ||||||||||||| | |||||||||||| || |||||| Sbjct 174762 ACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAATACATTCCAGTCTTC 174821 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 ||||| | | ||| | ||| || || || | || || ||| | || | || Sbjct 174822 AAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCATAGTTTGGTTCTGCT 174881 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCAT 132039 ||| | || | ||||||||||| || ||| ||| || | || |||||||| Sbjct 174882 ACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGATCCGCGGCCAT 174937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926599718070