Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq197 114 1e-20
seq1030 102 7e-17
seq176 100 2e-16
>seq197
Length=620651
Score = 114 bits (126), Expect = 1e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || || | ||| || || |||||||| || ||||||||||||| |
Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| ||||| || || | || || ||||||||||| |||
Sbjct 447710 AAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 447769
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || |||||| | | | ||||| | ||
Sbjct 447770 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTCACATTCTCGATGGTGTCTGAAGCTTCAA 447827
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||||||||| ||||| ||||| |||||||| |||||||||||
Sbjct 447828 CTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876
Score = 114 bits (126), Expect = 1e-20
Identities = 164/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | |
Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | |||||||| |||||||| ||| | || | || ||| ||||| ||
Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || || |||||| | | | ||||| || |||
Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTGGC--CTTCACATTCTCAATTGTGTCTGAGGCTTCCA 449515
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| ||| || || || || ||||| ||||| || |||||||||||
Sbjct 449516 CTTCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| |||||||| || || ||||||||||||| |
Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| || | || ||||| || | || || ||||| ||||| ||
Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||||||||| || | | ||| || | | | ||||| | |||||
Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACC 449745
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| ||||||||||| || ||||| || || || || |||||||| |||
Sbjct 449746 TCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCATGTTG 449796
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||||||| || || |||||||| || || ||||||||||| | |
Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || ||||| || || || || | || || ||||| ||||| |||
Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 447053
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || ||| || || | | | ||| ||| | |||||
Sbjct 447054 ATGCCCTCCTTGTCCTGGATCTTAGCT--TTAACATTCTCGATAGTATCGGCTGGCTCGA 447111
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||| ||||| || || || || ||||| |||||||||||
Sbjct 447112 CCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160
>seq1030
Length=27445
Score = 102 bits (112), Expect = 7e-17
Identities = 167/239 (70%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| ||||||| |||| || || || || ||||| || ||||||||||||| |
Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||||| ||||| || || | || || ||||| |||||| ||
Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || ||| || || | | | |||||| | ||||
Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCT--TTGACATTTTCGATGGTGTCGGAAGCCTCCA 2851
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCT 16945
|| | ||||||||| || || || || || || || || |||||||| |||| ||||
Sbjct 2852 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATTGTTGCCT 2910
>seq176
Length=676275
Score = 100 bits (110), Expect = 2e-16
Identities = 102/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403
|||||||| || ||||| || |||| ||||||||| | || |||| |||||||||
Sbjct 84379 GGCGGCGTCGGTCTGAACCTGTGCGGCGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 84320
Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACGC 29463
||||||||| ||||| ||||||||||| ||| || |||| |||| ||||| || | |
Sbjct 84319 AACCCGCAGCTGGAGCAGCAGGCGCAGGACCGTATATACCGCGTGGGGCAGCGGAAGCAC 84260
Query 29464 GCGCACGTGTACA 29476
| || | | ||||
Sbjct 84259 GTGCTCATATACA 84247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405079143004060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |