Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq197 114 1e-20 seq1030 102 7e-17 seq176 100 2e-16 >seq197 Length=620651 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| || ||||||||||||| | Sbjct 447650 CCTCCGCGCAGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAC 447709 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| ||||| || || | || || ||||||||||| ||| Sbjct 447710 AAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGG 447769 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | ||||| | || Sbjct 447770 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTCACATTCTCGATGGTGTCTGAAGCTTCAA 447827 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||||| ||||| ||||| |||||||| ||||||||||| Sbjct 447828 CTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | |||||||| |||||||| ||| | || | || ||| ||||| || Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || || |||||| | | | ||||| || ||| Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTGGC--CTTCACATTCTCAATTGTGTCTGAGGCTTCCA 449515 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||| || || || || ||||| ||||| || ||||||||||| Sbjct 449516 CTTCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||||| | Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | || ||||| || | || || ||||| ||||| || Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||||||||| || | | ||| || | | | ||||| | ||||| Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACC 449745 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||||| || ||||| || || || || |||||||| ||| Sbjct 449746 TCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCATGTTG 449796 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||||||| || || |||||||| || || ||||||||||| | | Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || | || || ||||| ||||| ||| Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 447053 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | ||| ||| | ||||| Sbjct 447054 ATGCCCTCCTTGTCCTGGATCTTAGCT--TTAACATTCTCGATAGTATCGGCTGGCTCGA 447111 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| ||||| || || || || ||||| ||||||||||| Sbjct 447112 CCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 >seq1030 Length=27445 Score = 102 bits (112), Expect = 7e-17 Identities = 167/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||||| |||| || || || || ||||| || ||||||||||||| | Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| ||||| || || | || || ||||| |||||| || Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | |||||| | |||| Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCT--TTGACATTTTCGATGGTGTCGGAAGCCTCCA 2851 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCT 16945 || | ||||||||| || || || || || || || || |||||||| |||| |||| Sbjct 2852 CCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATTGTTGCCT 2910 >seq176 Length=676275 Score = 100 bits (110), Expect = 2e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 |||||||| || ||||| || |||| ||||||||| | || |||| ||||||||| Sbjct 84379 GGCGGCGTCGGTCTGAACCTGTGCGGCGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 84320 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACGC 29463 ||||||||| ||||| ||||||||||| ||| || |||| |||| ||||| || | | Sbjct 84319 AACCCGCAGCTGGAGCAGCAGGCGCAGGACCGTATATACCGCGTGGGGCAGCGGAAGCAC 84260 Query 29464 GCGCACGTGTACA 29476 | || | | |||| Sbjct 84259 GTGCTCATATACA 84247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405079143004060