Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq197 98.7 9e-16
seq11 87.8 2e-12
>seq197
Length=620651
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| |||| || || ||||||| | ||||| || | ||
Sbjct 447876 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTCA 447817
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || ||| ||||| || || || || || ||||||
Sbjct 447816 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAA 447757
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || ||||| | || |||| |||||| || ||| |||||
Sbjct 447756 CAGCGTCTCATCTTCGCTGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAAC 447697
Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202
||||| || || || || || |||
Sbjct 447696 ATTCAGAAGGAGTCTACCCTCCAT 447673
Score = 82.4 bits (90), Expect = 7e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152
||||||| || ||||| || ||||| ||| || | || || ||||||||||| |||| |
Sbjct 448723 ACAAAGAGGGAATTCCCCCAGACCAGCAGAGGTTGATCTTCGCCGGCAAACAGCTAGAGG 448664
Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||| |||||| | || ||||| || || ||||||||||| || || || ||
Sbjct 448663 ATGGTCGCACCTTATCTGACTACAACATCCAGAAAGAATCCACCCTTCACTTGGT 448609
>seq11
Length=2281484
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/203 (70%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 51085 ATACA-ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAA 51143
||||| ||| ||||| |||| ||| | || || | |||||| || || || || |
Sbjct 1513333 ATACATACCGACATATCCATTAGAATCCCTGCCGTCTATGCTGTAGTGGTCATTCAGGTA 1513392
Query 51144 TATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCA 51203
||||| || || || || | ||| |||||||| || | || |||||||||||
Sbjct 1513393 TATGGAGTATTTCAGGGCATCTTCAGGACTGGGCGTCCACTCTAGTATCTTCTTGGCCCA 1513452
Query 51204 GTACATGCGCATGTAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAG 51261
||||||||||| | | ||||| ||||||||| || | || || || || |||
Sbjct 1513453 GTACATGCGCAGGAAGCCGTGTTGCTTGCCCTCCTTCACC--AGTTGTATCTGCGCAGAG 1513510
Query 51262 TTCCACAATTCGTCGTGAGTTTG 51284
||||| | ||||||||||||||
Sbjct 1513511 TTCCATAGCTCGTCGTGAGTTTG 1513533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433318525554110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |