Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq197 98.7 9e-16 seq11 87.8 2e-12 >seq197 Length=620651 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| |||| || || ||||||| | ||||| || | || Sbjct 447876 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTCA 447817 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || || || || |||||| Sbjct 447816 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAA 447757 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || ||||| | || |||| |||||| || ||| ||||| Sbjct 447756 CAGCGTCTCATCTTCGCTGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAAC 447697 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 ||||| || || || || || ||| Sbjct 447696 ATTCAGAAGGAGTCTACCCTCCAT 447673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 ||||||| || ||||| || ||||| ||| || | || || ||||||||||| |||| | Sbjct 448723 ACAAAGAGGGAATTCCCCCAGACCAGCAGAGGTTGATCTTCGCCGGCAAACAGCTAGAGG 448664 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 ||| |||||| | || ||||| || || ||||||||||| || || || || Sbjct 448663 ATGGTCGCACCTTATCTGACTACAACATCCAGAAAGAATCCACCCTTCACTTGGT 448609 >seq11 Length=2281484 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 51085 ATACA-ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAA 51143 ||||| ||| ||||| |||| ||| | || || | |||||| || || || || | Sbjct 1513333 ATACATACCGACATATCCATTAGAATCCCTGCCGTCTATGCTGTAGTGGTCATTCAGGTA 1513392 Query 51144 TATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCA 51203 ||||| || || || || | ||| |||||||| || | || ||||||||||| Sbjct 1513393 TATGGAGTATTTCAGGGCATCTTCAGGACTGGGCGTCCACTCTAGTATCTTCTTGGCCCA 1513452 Query 51204 GTACATGCGCATGTAACCGTGCATCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAG 51261 ||||||||||| | | ||||| ||||||||| || | || || || || ||| Sbjct 1513453 GTACATGCGCAGGAAGCCGTGTTGCTTGCCCTCCTTCACC--AGTTGTATCTGCGCAGAG 1513510 Query 51262 TTCCACAATTCGTCGTGAGTTTG 51284 ||||| | |||||||||||||| Sbjct 1513511 TTCCATAGCTCGTCGTGAGTTTG 1513533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433318525554110