Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_008464.1
Length=60238
Score E
Sequences producing significant alignments: (Bits) Value
seq997 297 7e-76
>seq997
Length=29618
Score = 297 bits (328), Expect = 7e-76
Identities = 371/508 (73%), Gaps = 13/508 (3%)
Strand=Plus/Minus
Query 5283 CTGCCGTTCTGGCGTTG--ATTGCCATCGGTGCGCCTGCGCCTGATATTCTCGACCAGTT 5340
|||| ||||||| | || |||| | ||||| ||||| | | |||||||| |||||
Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTGGCT--GGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843
Query 5341 TCTGGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGCATCTGGAC 5400
|||| ||||||||||||||||| | ||||| ||| |||||| || || |||||
Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783
Query 5401 CATCTGTCGGGGGGCCACGATGGTGGATGGAAAACCCGTTTTTCCCGGTATGAAACTGTC 5460
|| || || || || |||||||| ||| | ||||| ||| | | || |||||| || |
Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723
Query 5461 GAAGGAAAAATGCGACCAGGTCAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 5520
||| |||||| | | ||| || || || || || ||||||| ||||||||||| ||
Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663
Query 5521 GAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 5580
|| || || || | | |||||| |||||||| || ||||| || ||||||||
Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603
Query 5581 GTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGG 5640
||||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543
Query 5641 TGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 5700
||| ||| || || || ||||| |||||||||||||||| |||| |||| | |||||
Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483
Query 5701 CCGTATTCGTTCA---------AACAACTGCTACGGTCAGGTATCCCGTCGTGACCAGGA 5751
||| | | | ||| |||||||||||||||| || || ||||||||
Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423
Query 5752 GAGCGCGCTGTCATGCTGGGGTATCGAC 5779
|| || || | |||||||| || |||
Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 158 bits (174), Expect = 5e-34
Identities = 239/336 (71%), Gaps = 18/336 (5%)
Strand=Plus/Minus
Query 6855 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 6914
|| || || ||||| |||||||| |||||||||||||||||||||||| | || ||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129
Query 6915 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 6971
|| | ||| || || ||||| | || |||||| ||||||||||||| |||
Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069
Query 6972 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 7031
|| || ||||||| |||| | | ||| || ||||||| || | | ||| |||
Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009
Query 7032 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 7088
| ||| || | |||| | || | || |||| | ||||||| | |||||| |
Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954
Query 7089 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 7148
|| || ||| |||||||||| | || ||| |||| |||||||| |||| |
Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898
Query 7149 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 7184
||| ||||||||||||||||||||| ||||||| ||
Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 192635896045600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |