Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq997 297 7e-76 >seq997 Length=29618 Score = 297 bits (328), Expect = 7e-76 Identities = 371/508 (73%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 5283 CTGCCGTTCTGGCGTTG--ATTGCCATCGGTGCGCCTGCGCCTGATATTCTCGACCAGTT 5340 |||| ||||||| | || |||| | ||||| ||||| | | |||||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTGGCT--GGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 5341 TCTGGATGAAAAAGAGGGTAACCACACTACGGCATACCGCGATGGTTCCGGCATCTGGAC 5400 |||| ||||||||||||||||| | ||||| ||| |||||| || || ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 5401 CATCTGTCGGGGGGCCACGATGGTGGATGGAAAACCCGTTTTTCCCGGTATGAAACTGTC 5460 || || || || || |||||||| ||| | ||||| ||| | | || |||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 5461 GAAGGAAAAATGCGACCAGGTCAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGA 5520 ||| |||||| | | ||| || || || || || ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 5521 GAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCC 5580 || || || || | | |||||| |||||||| || ||||| || |||||||| Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 5581 GTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGG 5640 ||||||||| || || |||||||| |||||||| ||||| ||||| || || ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 5641 TGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 5700 ||| ||| || || || ||||| |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 5701 CCGTATTCGTTCA---------AACAACTGCTACGGTCAGGTATCCCGTCGTGACCAGGA 5751 ||| | | | ||| |||||||||||||||| || || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 5752 GAGCGCGCTGTCATGCTGGGGTATCGAC 5779 || || || | |||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 158 bits (174), Expect = 5e-34 Identities = 239/336 (71%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 6855 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 6914 || || || ||||| |||||||| |||||||||||||||||||||||| | || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 6915 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 6971 || | ||| || || ||||| | || |||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 6972 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 7031 || || ||||||| |||| | | ||| || ||||||| || | | ||| ||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 7032 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 7088 | ||| || | |||| | || | || |||| | ||||||| | |||||| | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954 Query 7089 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 7148 || || ||| |||||||||| | || ||| |||| |||||||| |||| | Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898 Query 7149 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 7184 ||| ||||||||||||||||||||| ||||||| || Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192635896045600