Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_008515.1
Length=165890
Score E
Sequences producing significant alignments: (Bits) Value
seq236 190 2e-43
seq637 154 2e-32
seq895 84.2 2e-11
>seq236
Length=545527
Score = 190 bits (210), Expect = 2e-43
Identities = 152/183 (83%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 60616 TTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60675
||||| || || || |||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836
Query 60676 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60735
||| ||||| || |||||||| || || || |||||||||||||| |||||||| || ||
Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776
Query 60736 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 60795
|| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| ||||||||
Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716
Query 60796 TTC 60798
|||
Sbjct 30715 TTC 30713
>seq637
Length=122170
Score = 154 bits (170), Expect = 2e-32
Identities = 138/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 60629 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60688
||||| ||||| | ||||||||| |||||||||| |||||| |||||||| || |||
Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178
Query 60689 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60748
|| || || |||||||||||||||||||| |||||||| || ||||| | | |||||
Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238
Query 60749 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60801
||| ||||||| || ||||| ||||||||||| ||||||||||| ||
Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq895
Length=39754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 60628 GGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 60687
||| || || || | || || || ||||||| || | ||||| | ||||| || ||
Sbjct 11879 GGTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCAC 11938
Query 60688 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60747
||||| || || || ||||||||||| | ||| || || || |||||| || |||||
Sbjct 11939 CGCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATC 11998
Query 60748 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60801
|| | || || || ||||||||||||||||| || || || |||||
Sbjct 11999 GAGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530708098604000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |