Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq65 176 5e-39 seq72 136 4e-27 seq64 136 4e-27 seq354 134 2e-26 >seq65 Length=1244346 Score = 176 bits (194), Expect = 5e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| ||||| || || || | | || |||||||||||||| ||||||||||| || Sbjct 630995 ATCTCTGATGTAAGTGTCAATAAGTAATGAGTACATTTCAGAATGTACATTCTCCATGGC 630936 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||||||||||| ||||||||||| || | |||||||| || || || || || Sbjct 630935 GATTTGGAATCCGTAGAAGCATCTAGCTTCAGTCACTTGCACTTCCTGGGAGAACCTTTC 630876 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || || || ||||| || || ||||| || || ||||| || ||||| | ||| || || Sbjct 630875 CACAAGGTTCTCATTAACAATCCCATCAGAAGCAGCAAAGAATGCCAAGACATGTTTGAT 630816 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 |||||| | ||| ||||| || | |||||||| |||||||| Sbjct 630815 AAAATGCCTTTCACAGTCTTTCAGGCTTTCCCAATCTGATAGATC 630771 Score = 109 bits (120), Expect = 6e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 93111 AACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTT 93170 ||||| | |||| || ||||| ||||||||||| || | || || | || |||| | Sbjct 631697 AACCT-CATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCT 631639 Query 93171 TCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAA 93230 | || ||||| || || || || ||||| ||||| || || || || || || || || | Sbjct 631638 TTTTAAGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGA 631579 Query 93231 ATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAAT 93290 |||| || || | ||| | || |||||| || |||| |||||| | | ||||| | Sbjct 631578 ATGCTACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGT 631519 Query 93291 CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 | || || ||||| | ||| || || || || | ||| || || ||| |||| Sbjct 631518 CAGCCTTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAGGAAATC 631467 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||| || || |||||||| || ||||| || || ||||| || ||||||||||| | | Sbjct 630537 TTTGAGAGGTCAACTTCTTCAACGGTCCAGAAAGAAGCTTCCGCCTTTTTGTACATTTGC 630478 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || |||| || ||||| || || || ||||| || ||||| || || | Sbjct 630477 CAAATATCTTTGTACTGAATCGGGAAGATCACAAACCGGCGCGGGTTCTCACGCAGCAGG 630418 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 ||||| | ||| |||||||| Sbjct 630417 GGCTCCAATTGCGGGTCAAA 630398 >seq72 Length=1153005 Score = 136 bits (150), Expect = 4e-27 Identities = 95/107 (89%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 962501 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 962442 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||||||||||||||||||||| || ||| ||||||| Sbjct 962441 GTGGGTTCGAACCCCACACCTGACAAATATTTTTTG----TTTTGTT 962399 >seq64 Length=1245810 Score = 136 bits (150), Expect = 4e-27 Identities = 96/107 (90%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 107958 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 107899 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 107898 GTGGGTTCGAACCCCACACCTGACAAA-TATTTTTG----TTTTGTT 107857 >seq354 Length=355819 Score = 134 bits (148), Expect = 2e-26 Identities = 88/95 (93%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 240313 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 240372 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||||||||||||||||||| |||| ||| Sbjct 240373 TGGGTTCGAACCCCACACCTGACAAA-TATTTTTG 240406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556848312396560