Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq356 84.2 5e-13 >seq356 Length=353365 Score = 84.2 bits (92), Expect = 5e-13 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| |||||||| || || | || | || | ||| || || ||| | Sbjct 97917 TGCACCTTCCACAAGTACGGTCCCTCCGGAACGGTGCAGAAGTTCGACGGCCTGTGCGTG 97976 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || ||| ||| | || ||||||||||||||| | ||||| |||||||||||| | | Sbjct 97977 CTGCCGCTCAACATCGTGAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCATC 98036 Query 3487 CTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGCATTGCTCTGCTAGCGTCCCCTGCG 3546 || | ||| | ||||| ||| | ||||||||| | || || | ||| ||| ||| Sbjct 98037 CTGTCGATCCTGAGCGGCATCTCGCTGCTGTACCGCGTGGCGGTGGTGGCGGGCCC-GCG 98095 Query 3547 C 3547 | Sbjct 98096 C 98096 Score = 84.2 bits (92), Expect = 5e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 3410 ACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCT 3469 |||| | ||||||||||| || |||||||||||||||||||||||| | ||||||| Sbjct 179380 ACGACGCGCTCTGCATCCTGCCCCTCAACGTGGTCAACGAGAAGATCTACGTGTTCCTCT 179321 Query 3470 GGTTCTGGTTC 3480 ||||||||||| Sbjct 179320 GGTTCTGGTTC 179310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479755119000