Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq486 214 3e-50 seq65 140 6e-28 >seq486 Length=217039 Score = 214 bits (236), Expect = 3e-50 Identities = 947/1473 (64%), Gaps = 70/1473 (5%) Strand=Plus/Plus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 |||||| ||| |||||||| || ||||| || || || | | ||||| | ||| Sbjct 175094 CAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGA 175153 Query 244141 GCTGAGCGGCTCGA-TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCA 244199 ||| ||||| | || | || ||||||| || ||||| || ||| || || |||| Sbjct 175154 AGTGAATGGCTCAAATGAT-TCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCA 175212 Query 244200 TGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG--CGGAGTCTGAGCTC 244257 |||| | || || |||| ||||| || ||| || || ||| | | || |||| | Sbjct 175213 TGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCAC 175272 Query 244258 GTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAG 244317 |||||||||||| | | | | ||| || ||| |||||||| ||| | |||| Sbjct 175273 --TCCAGTCCCACAGGTCTGTG-GGTG-TC---TTT----CCCCACATTTCATATTGCAA 175321 Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTG---GGC 244374 | || | ||| | || | || | || || || | || || | | ||| Sbjct 175322 TATTCCTTCACTGGCCGGACAACCAGCATACGTTTCATA---AACGCCGAGTTTTTCGGC 175378 Query 244375 CAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCAT 244434 ||| | |||||| | || | || | || |||||||| || || || ||||| || Sbjct 175379 CAGTTCACAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATAT----TTGTTGAT 175434 Query 244435 GTCGC----GGGC--CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 || |||| ||| | | || | || | || ||||| | || | ||||| Sbjct 175435 TGAGCTTCTGGGCTCCTTCACTCTCGTAA--GGAAGGCGCATCAATACAAAAGCATCGGC 175492 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 ||| || || ||||| |||||||| |||| ||| | | |||| || | ||||| || Sbjct 175493 CAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGG 175552 Query 244549 CACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGAC 244608 ||||| || | || | ||||| | |||||| ||||| || || || | || Sbjct 175553 GACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGGTCAC 175612 Query 244609 GTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAA 244668 | || || ||| || || | || |||| | ||||| Sbjct 175613 TTGTTTTAGTTTCTCAAAATCATATGTTTT---ATTTTCGG------------TTACAAA 175657 Query 244669 CTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG-AGTTGGTGTACT 244727 | ||||| || | |||| |||||| || || || || || | || || |||||| Sbjct 175658 CATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATG-TGTACT 175716 Query 244728 GGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACT 244787 |||||||| ||||| || || ||||| |||||||| |||| | || |||||| || Sbjct 175717 CAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGATTGCTCT 175776 Query 244788 TGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGA 244847 | |||||| || || ||||| |||||| | || || ||||| | || || | | Sbjct 175777 TTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTGCCTCAA 175836 Query 244848 GGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGT 244907 | ||||| ||| ||| ||| | | | | | || ||| || | Sbjct 175837 TAATAGCCTTCCATAGGATTTGAGCGCGGACTTTTTTAACAAACCTACCTTCTTGTTCAT 175896 Query 244908 AGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACG 244967 | || | || || || || ||||| || | | ||| |||| | || Sbjct 175897 ATTTCTGATATAATGCATCAAATTCATCTCCCCAACAATCAGCCAAGCCAGGGCT-GTCG 175955 Query 244968 CC-GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||||| || |||||||| || || || ||||||| |||||| || || | | Sbjct 175956 TGAGGGCACATAAGGCTCCACTCCTCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAG 176015 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| || || | ||| || || | | | | || || ||| ||||||||| || Sbjct 176016 ATCCACAGAGCATAGAACAGCTCTCGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTC 176075 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 | || | || || || | ||| ||||||| ||||| | |||||| |||| ||||||| Sbjct 176076 AAGTCTAGGAACTCGAATATGTCAGCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCG 176135 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 |||||||||||||| ||||||||||| | | | |||| | | |||||| | Sbjct 176136 GGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATG 176195 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | ||||| ||| |||||| |||||| |||||||| ||| || | |||| Sbjct 176196 GGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGA-- 176253 Query 245267 TTGCTGATGGACATG----CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTT 245322 ||| ||| ||||| |||| ||||| ||| ||||| || | || || ||| Sbjct 176254 -TGC-AATGAACATGAACTCCTATGCCGCCCGCGGATTTGGATATTAATGCACACTGCTT 176311 Query 245323 GATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGA 245382 | ||||| || || || |||||||| ||||||| || || || || ||||| Sbjct 176312 CAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTCATGGCGATGAGGAAACATGAGGA 176371 Query 245383 CAGCTG-GGGCTTGGGGCTGC--ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 ||||| |||| |||| || ||| |||||| |||||||||||||| || ||||| Sbjct 176372 GAGCTGAGGGCGGGGGGTGGCGGCCGA---GAACAGGGTGGGGCTGGCGTGCGTGAAGTA 176428 Query 245440 GCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT-C 245497 | ||| ||||| | ||| || || |||||||||| | |||||||||| | Sbjct 176429 -CTTCTCGGAGAGCAGGTTGTAGGTGGTGATGGCGGCGTCGATGTCGGCGCCGTGGATGC 176487 Query 245498 TGCAGGGCGCACCTCATGAGGGTGTGCTGGGGC 245530 | || | | || ||| || ||||||| ||| Sbjct 176488 CGATGGACAC-CCGCATCAGCATGTGCTGCGGC 176519 >seq65 Length=1244346 Score = 140 bits (154), Expect = 6e-28 Identities = 169/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || | ||||| | ||||| | ||||||||||| ||||||||| | | Sbjct 631473 CTGTTCAATGCTGTTGAGACCCTTCCCTGTGTAAAGAAGAAGGCTGACTGGGCGATGCAG 631532 Query 42669 TGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||| || | || |||||| ||||| || || | ||||| || | || || || Sbjct 631533 TGGATCGGCAG-CAAGACCGCAACATTCGGTGAAAGAATAGTAGCATTCGCGGCAGTTGA 631591 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGA 42786 ||||||||||||||| ||| ||||| |||||||||||||| || ||| ||| || | Sbjct 631592 GGGCATCTTCTTCTCTGGCAGTTTCGCATCCATCTTCTGGCTTAAAAAGAGAGGGCTC-A 631650 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 |||||||||| |||||| || ||| | ||| ||| || |||| Sbjct 631651 TGCCCGGACTGACCTTCAGCAATGAATTGATCTCCAGAGATGAGG 631695 Score = 118 bits (130), Expect = 2e-21 Identities = 143/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | |||||||||||||| ||||| | ||||| || ||||| | Sbjct 631989 AGGGCCTCCACACAGACTTTGCCTGCCTGATGTTCAAG---CACCTAGTCCAGAAGCCTT 632045 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | |||||||| || | | ||||||||| ||| ||||||| |||||| |||||||||| | Sbjct 632046 CCAAGGAGCGAGTGCTGACCATCATCAAGGACGCCGTGGTCATCGAGCAGGAGTTCCTGA 632105 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | | |||||||| || ||||||||||| || ||||||| |||||||| Sbjct 632106 CAGATGCTCTGCCCGTCAGACTCCTCGGCATGAACTGTGAACTCATGTCTGAGTACATCG 632165 Query 43009 AGTACGTCGCCGAC 43022 ||| || |||||| Sbjct 632166 AGTTTGTGGCCGAC 632179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944318023193440