Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq1001 306 8e-79 >seq1001 Length=29257 Score = 306 bits (338), Expect = 8e-79 Identities = 773/1165 (66%), Gaps = 58/1165 (5%) Strand=Plus/Minus Query 23358 TCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGTGTAGTCATAA 23417 |||||||||||||||||||| ||| ||||| || ||||| || || |||||||| ||| Sbjct 7851 TCGGTGATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAA 7792 Query 23418 TCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGCTCCGGATCGATCCAC 23477 ||||| ||| ||| |||| || | || | ||||| | |||||| ||| ||| Sbjct 7791 TCGATATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGGGTCGTACCA- 7733 Query 23478 GCGCTACC-GCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACCAGCCGTTGATGCT 23536 || ||| | | | | |||||||| | ||| || || | | ||||| | Sbjct 7732 GCATGACCCGTCAACGATATAGCCGTTATTTTTCAGCTCGCGGAATTTGGCATTGATACC 7673 Query 23537 TTCCACGATGTCGCGCGCGAGCGA--CGGATTCAGCGGGC-----CGTCGACGACGGGCA 23589 | || |||||||| |||| |||| | ||||| | ||| | ||| | Sbjct 7672 GGCGACAATGTCGCGGATAAGCGTTGCGGA---AACGGGCTTGTCCATCGCCCACGCG-- 7618 Query 23590 TCTGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGTGCGCGTGTAGTTCTCGAACG 23649 ||||| || || |||| ||||| |||||| || ||||| |||||||| || ||| Sbjct 7617 --TGCGCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAACA 7560 Query 23650 CGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT---TGCGGT 23706 |||| |||||||||||||| || || | |||||||||| ||||||| ||||| Sbjct 7559 CGAATAAAGGATCGTCCGAGCAGGTACGGTTGCCCCAGAACTTAAAGCCGTCGTTGCGGA 7500 Query 23707 TCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCTGCA 23766 | | |||| ||||| || || ||||| | || ||||| ||| | ||||||| Sbjct 7499 TTA---GCGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGCA 7443 Query 23767 AATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAATCG 23826 ||||||| || || |||||||| ||||| ||||| |||||| | || || || | || Sbjct 7442 AATCCCATGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGCG 7383 Query 23827 TCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCGCCGGCG 23886 | |||||||| ||| | || | |||||| || ||||||| |||| ||| || | || Sbjct 7382 TTTTGTGCCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTCG 7323 Query 23887 CCGGGATG--ACGGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCCGGCCAGAT 23944 || ||| | | || ||||| |||| |||||| | || |||| || || Sbjct 7322 CC--CATGCAATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGAAT 7265 Query 23945 CACCATGATTTCGCGTTGGCCGAACTGCCTGCGGTACGCGGCGGCTTCTTCCTTCGTCTT 24004 ||||| | ||||| |||| ||| | | ||||| | ||| || | ||||| Sbjct 7264 GACCATCAGCTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTCTT 7205 Query 24005 GCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGC 24064 |||||| |||| || ||| | | ||||||||| ||| ||| | ||| ||||| Sbjct 7204 GCAGCCCCACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTGGCAGGTTGACGCAAGCGC 7145 Query 24065 GGCCGCGACCGGCTGCGTATCGAGGCCGGGCGCGGCGAGAATGCGCGGCTTCACGCCGAG 24124 || ||| || ||||||||| || || ||| || |||||||||||||||| |||||| Sbjct 7144 GGTCGCCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCGGT 7085 Query 24125 CGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCG--TCCGGC-GTCAC 24181 | | ||| | | |||||| || | || ||||| |||||| | || | ||| Sbjct 7084 GACGGTTTTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTGCCGTTTTCGTCGGTC-- 7027 Query 24182 GGTGCCGATGACGTTCGAGGTCGTCTC------------------GTCGGC---GTCCTT 24220 |||||||||| ||| || | || || ||| || ||| | Sbjct 7026 -GTGCCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGGTCGTC 6968 Query 24221 G---CCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTC 24277 | ||||| | |||||||| || || | | ||| || ||| | | |||| || | Sbjct 6967 GACACCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATGGCCTG 6908 Query 24278 GAGCG-TGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCGGCGACGACGTTCG 24336 || | | || |||||||||||| || ||||| || |||| || | ||| | Sbjct 6907 CAGGGATTTTGC-CAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCACGCTGT 6849 Query 24337 TCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGA 24396 | | ||| || ||| || | || || | | |||||||| ||| |||||||||| Sbjct 6848 TAATCAGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGTGCAGA 6789 Query 24397 CGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGA 24456 | | ||||| | ||||||||| || | | ||| | ||| ||| ||||| || |||| Sbjct 6788 CCATGCCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAATCTCGA 6729 Query 24457 TGACGCGTACGCCGTGGTGGTAATC 24481 |||| |||||||| || || || Sbjct 6728 TGACCTCGACGCCGTGATGATAGTC 6704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114247166055084