Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq960 230 7e-56 >seq960 Length=33163 Score = 230 bits (254), Expect = 7e-56 Identities = 902/1405 (64%), Gaps = 38/1405 (3%) Strand=Plus/Plus Query 17274 ATCGTGGGGCTGGTGAATGGCCTGCAGTCGGTCTATCTCGACGGCACGCCGATCCAGAAC 17333 |||||||| ||| ||| ||| || ||||| | ||| ||| ||||| | ||| Sbjct 12410 ATCGTGGGCCTGAAGAACGGCAAGCGCTCGGTGTTCCTCAACGAGACGCCCCTGGCCAAC 12469 Query 17334 GCGGACGGCTCGCTGAATTTC-CAGAACTACACCGTCGACGCGCGAACCGGCACGCAGGA 17392 || |||||| ||||| ||| | | | || | |||| | || | ||||| ||||| Sbjct 12470 GCCGACGGCAGCCTGAACTTCTCCGGGGT-CAGCCTCGAGACCCGCAACGGCAGCCAGGA 12528 Query 17393 TCAGGACTACATCTCGGGTTTTCCGGCCGTCGAGCGTGAGGCCGGCGTCGGCGTGCCGCT 17452 ||| ||||||| |||| |||||||| || ||| ||| || || | ||| || Sbjct 12529 CCAGACCTACATCCCGGGCTTTCCGGCGGTGGAGAACGAGTCCCAGGTGGCGGTGGAACT 12588 Query 17453 GACGTCCGACGCGCCGTGGGTGCGCCAAATCCAGAATACGCAACTGACTGCGGTGCGCGT 17512 | |||| || ||| ||| ||| || ||||||| | ||||||||| | Sbjct 12589 GCGCAGCGACCAACCCTGGACCCGCGCCATCACCAACCTGCAACTGTCGGCGGTGCGCAT 12648 Query 17513 GCGCTTCGGTGTGCCGGCGCTACAGCGTCAGG---ACACGTCGAACGGCAATATCACGGG 17569 ||| | | || || ||| | | ||| |||| |||||| | | || || Sbjct 12649 CCGCCTGGCGGTCTCG-CGC--CTGGCCCAGACCAACACCAGCAACGGCGACACCAACGG 12705 Query 17570 CTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGGTCGTATGCGCAGGTGCT 17629 ||| || || || ||||| |||| |||||||||| ||| | | ||||| Sbjct 12706 CTACACGGTGCGTTACGCCATCGAGCTGTCCACCGACGGCGGGGCGTTCGTCGAAGTGCT 12765 Query 17630 GGCCGGT--GCGTTCGACGGCAAGACGACGTCGCTCTATGAGCGCTCGCATCGGATCGAG 17687 | | || || ||| |||||||| | || |||||||| || ||| |||| Sbjct 12766 G--CAGTCGGCCTTCAGCGGCAAGAGCTCCAGCAAGTACGAGCGCTCCCACCGGGTCGAC 12823 Query 17688 CTGCC-GCGCGCAAAAAATGGTTGGTTGATCCGCGTGCGCCGCATCACGCCGAACGCGCA 17746 ||||| ||| || || || ||| | || ||||| || | ||| ||||| | Sbjct 12824 CTGCCAGCG-GCCAAGGCCGGCTGGACCGTGCGGGTGCGGCGGCTGACGGCGAACTCCAG 12882 Query 17747 CACGGCGACGATCGCCGACGCGATCAACATCGAGGCGATTACCGAGATCATCGATCGGAA 17806 || | | |||||||||| | | || | | ||| | || ||||| | ||||| || Sbjct 12883 CAGCGGGGCGATCGCCGATACCACCAGCGTGGAGTCCATCACCGACGTGATCGACGCCAA 12942 Query 17807 GCTCCGCTATCCGATGACGGCGCTTGTCGGTATGACGTTCGACGCACGTTCGTTC---TC 17863 | | ||||| ||| ||||| | |||| || |||||| || |||| || Sbjct 12943 GTTGCGCTACCCGGGTTCGGCGATCATCGGCCTGCAGTTCGATGCCTCGCAGTTCCAGTC 13002 Query 17864 GAGCGTGCCA---GTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGAGTCCCGACAAA 17920 || | ||| | | |||| || ||| |||| |||| |||| || || | || Sbjct 13003 GAT--TCCCAACCGCTCCTTCGAAT----TGCAAGGGCGGATCATCCGCGTGCCAAGCAA 13056 Query 17921 CTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGACGGTACGTTCAAGGCAGCATG 17980 |||||| |||| || || || ||| || |||||||| || |||||| | || || Sbjct 13057 CTACGATCCGGCCACCCGGACCTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTG 13116 Query 17981 GACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTCTCGACAAGCTCAACGGATTGGG 18040 ||| |||| ||||| ||| ||||||||| ||| || || || ||| | || | || Sbjct 13117 GACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGG 13176 Query 18041 TGACCGTGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAATCGCGCGTTACTG 18100 ||| || | || | ||| || ||||||| ||||||| |||| | ||||| Sbjct 13177 GCACCTGCTCAACGCCGCCCAGGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTG 13236 Query 18101 CGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCACCTGCAACTGCGT 18160 |||| | | |||||||| || |||||||||| ||||||||||| ||||||||| | Sbjct 13237 CGACCAGCCGGTGTCCGATGGCAAGGGCGGCACCGAGCCGCGCTTTACCTGCAACCTCTA 13296 Query 18161 GCTTCAGACGCGCGCGGACGCATTCAAGGTGGTACAGGATCTCGCGAGCGTCTTTCGCGG 18220 || | |||||| || || | || ||| | ||||| || || | | ||| ||||| Sbjct 13297 TCTCTCGGTGCGCGCCGATGCGCTGAAAGTGCTGCAGGACCTGGCCACCACCTTCCGCGG 13356 Query 18221 CATTTCGTACTGGGGCGCCGGGTCGGTGGTCGCGTCGGCCGATATGCCGTCCGATCCGGT 18280 ||| | || |||||||| || |||||| | ||| |||||| |||||| || ||||| Sbjct 13357 CATGGCCTATTGGGGCGCAGGCTCGGTGATGGCGGTGGCCGACATGCCGGAAGACCCGGT 13416 Query 18281 CTACCTGTACACGGCCGCGAATGTCGTCGGTGGTTCATTCAAGTACGTCGG--CAGCGAA 18338 ||| |||| ||| || || ||| || ||| |||| || | ||||| Sbjct 13417 GTACACCTACAGCAACGCCAACGTGATCGACGGCAAGTTCGTCTACGGTGGCTCGGCGAA 13476 Query 18339 CGCAAGACGCGTTACACGGTCGCGCTCGTCAGCTACAACGATCCGACGAACCAGTACAAG 18398 ||||| || |||| || || || || |||| ||||| ||| || || ||| | Sbjct 13477 --AAAGACCCGCTACAGCGTGGCCCTGGTGAGCTGGAACGACCCGGCGGACTTCTACCGG 13534 Query 18399 CAAGCTGTCGAGCCCGTGCAGGACGACGACGGGATCGCGCGATATGGCGT-CATCAAGAC 18457 || || || ||| | || || || ||||| || |||||||| || | |||| Sbjct 13535 CAGAAGGTGCAGTACGTCGACGATCCGGAAGGCATCGCCCGTTATGGCGTGCAGC-AGAC 13593 Query 18458 GGAGGTCACGGCGTTCGGCTGCACGTCGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNT 18517 ||| |||| || ||||||||| || |||| Sbjct 13594 CGAGATCACCGCCACCGGCTGCACCTCCCAGGCCCAGGCCCAGCGCATCGGCAAATGGGC 13653 Query 18518 GCTGCTGACGTCGCGGTACGAGACCGGGACGGTGTCGTTTCAGGTCGGGCTCGACGGGAC 18577 ||||||||| || || |||| | ||| ||| || || || ||||| || Sbjct 13654 GCTGCTGACCAACCGCCTGGAAACCGAAAGCGTGAGTTTTTCTGTGGGCCTGGACGGAAC 13713 Query 18578 GCTTTGTGCG-CCGGGACAGGTGATCGCCGTTGCCGACCCAAAGA--AGGCCGGCCGCCG 18634 | | ||||| ||||| ||||||||| ||| || || ||| || ||||||||| || Sbjct 13714 -CCTGGTGCGTCCGGGGCAGGTGATCCGCGTGGCGGA--CAACGACCGGGCCGGCCGGCG 13770 Query 18635 GATCGGCGGGCGCATCCGCGCAGCG 18659 ||||||||||||| | ||| | ||| Sbjct 13771 GATCGGCGGGCGCCTGCGCTCGGCG 13795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155631884386608