Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq1001 315 2e-81 >seq1001 Length=29257 Score = 315 bits (348), Expect = 2e-81 Identities = 775/1165 (67%), Gaps = 58/1165 (5%) Strand=Plus/Minus Query 24362 TCGGTGATGCGCTGGCGCAGCACCAGATTTTCGAGAGGCGGAACCGGCGTGTAGTCGTAA 24421 |||||||||||||||||||| ||| ||||| || ||||| || || |||||||||||| Sbjct 7851 TCGGTGATGCGCTGGCGCAGGGTCAGGTTTTCCAGCGGCGGGACGGGGGTGTAGTCGTAA 7792 Query 24422 TCGATGTACGCCTTGCCGGACGCGAGAATGTCGGCCGTGTTCGGCTCCGGATCGATCCAC 24481 ||||| ||| ||| |||| || | || | ||||| | |||||| ||| ||| Sbjct 7791 TCGATATACAGCTTCCCGGCTTTCAGGGTTTCCACGGTGTTTGACTCCGGGTCGTACCA- 7733 Query 24482 GCGCTACC-GCCGATCAGGTAGCCGTTCGCGACCTGCTGCCGAAACCAGCCGTTGATGCT 24540 || ||| | | | | |||||||| | ||| || || | | ||||| | Sbjct 7732 GCATGACCCGTCAACGATATAGCCGTTATTTTTCAGCTCGCGGAATTTGGCATTGATACC 7673 Query 24541 TTCCACGATGTCGCGCGCGAGCGA--CGGATTCAGCGGGC-----CGTCGACGACGGGCA 24593 | || |||||||| |||| |||| | ||||| | ||| | ||| | Sbjct 7672 GGCGACAATGTCGCGGATAAGCGTTGCGGA---AACGGGCTTGTCCATCGCCCACGCG-- 7618 Query 24594 TCTGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGTGCGCGTGTAGTTCTCGAACG 24653 ||||| || || |||| ||| | |||||| || ||||| |||||||| || ||| Sbjct 7617 --TGCGCCTCCGCCATCGTGTCGGCCAGCACCTGCGCCGTGCGGGTGTAGTTTTCAAACA 7560 Query 24654 CGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAACCGGAAGCCGT---TGCGGT 24710 |||| |||||||||||||| || || | |||||||||| ||||||| ||||| Sbjct 7559 CGAATAAAGGATCGTCCGAGCAGGTACGGTTGCCCCAGAACTTAAAGCCGTCGTTGCGGA 7500 Query 24711 TCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGCATCGGTCGCCGGGTCCTGCA 24770 | | |||| ||||| || || ||||| | || ||||| ||| | ||||||| Sbjct 7499 TTA---GCGTTGTCACCCCGGCCTGATTCAGCAGGTTGGCGTCGGTAGCCTGCTCCTGCA 7443 Query 24771 AATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTTCACGACGACATTCGAAATCG 24830 ||||||| || || |||||||| ||||| ||||| |||||| | || || || | || Sbjct 7442 AATCCCATGAGACCGAGGCGCTGACGCCGGTGACGCCATTCACGCCAACGTTAGACAGCG 7383 Query 24831 TCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAAGCCGGCGGCGATCGCCGGCG 24890 | |||||||| ||| | || | |||||| || ||||||| |||| ||| || | || Sbjct 7382 TTTTGTGCCATCCGGTCTCCTGGTCGATTTTGGCGCGCAGGCCGAGCGCGCGGGCGGTCG 7323 Query 24891 CCGGGATG--ACAGCCGTCGAGTTCGTCGTGTCGTCCCAGCCGAGCCAGTCCGGCCAGAT 24948 || ||| | | | || ||||| |||| |||||| | || |||| || || Sbjct 7322 CC--CATGCAATATCGGTTTCGTTCGCCGTGGTGTCCCATGCCAGAAAGTCAGGGTGAAT 7265 Query 24949 CACCATGATTTCGCGTTGGCCGAACTGCTTGCGGTACGCGGCGGCTTCTTCCTTCGTTTT 25008 ||||| | ||||| |||| ||| | || ||||| | ||| || | || || Sbjct 7264 GACCATCAGCTCGCGCTGGCTGAAATTCTCACGGTATTTGATGGCGTCGGAAATGGTCTT 7205 Query 25009 GCAGCCGGACGCCGACACATAGGCCATCGCGCGCAGCGACTGCGCGGTCGCCGCGAGCGC 25068 |||||| |||| || ||| | | ||||||||| ||| ||| | ||| ||||| Sbjct 7204 GCAGCCCCACGCGCTTACGTAGCCGAACGCGCGCAGGCTCTGGCAGGTTGACGCAAGCGC 7145 Query 25069 GGCCGCCACCGGCTGCGTATCGAGGCCGGGCGCCGCGAGAATGCGCGGCTTCACGCCGAG 25128 || |||||| ||||||||| || || ||| | |||||||||||||||| |||||| Sbjct 7144 GGTCGCCACTTCCTGCGTATCCAGCCCCGGCACGCCGAGAATGCGCGGCTTAACGCCGGT 7085 Query 25129 CGCACCCTGCGCGGCGAGCAGCGCCTTGATGCCCGTGTACTTGCCG--TCCGGC-GTCAC 25185 | | ||| | | |||||| || | || ||||| |||||| | || | ||| Sbjct 7084 GACGGTTTTCGCCGTTAACAGCGCTTTCAGCCCGGTGTATTTGCCGTTTTCGTCGGTC-- 7027 Query 25186 GGTGCCGATGACGTTCGAGGTCGTCTC------------------GTCGGC---GTCCTT 25224 |||||||||| ||| || | || || ||| || ||| | Sbjct 7026 -GTGCCGATGATGTTGGAAATGGTTTCTTTCTGCGCCGCTTCCGGGTCTGCCGGGTCGTC 6968 Query 25225 G---CCTTCGGCGACGCGCACGACGACGGTCAGCGGCTTCGTCTGCTTGCCGATCGCGTC 25281 | ||||| | |||||||| || || | | ||| || ||| | | |||| || | Sbjct 6967 GACACCTTCTGGAACGCGCACCACCACAATGACCGGTTTGCACTGGTCGGCGATGGCCTG 6908 Query 25282 GAGCG-TGCGGCGCAGCGTGCCTTTCTTGCCGGCCTTGCCGAGCGCCGCGACGACGTTCG 25340 || | | || |||||||||||| || ||||| || |||| |||| ||| | Sbjct 6907 CAGGGATTTTGC-CAGCGTGCCTTTTTTACCGGCTTTACCGATAGCCGTTTGCACGCTGT 6849 Query 25341 TCAGCAGCACGGGCGTATTGAGCGGAAACGCGCTCGCGTCAGCGTCGGCCGCCGTGCAGA 25400 | | ||| || ||| || | || || | | |||||||| ||| |||||||||| Sbjct 6848 TAATCAGTACCGGCTCGTTTAAGGGGAATGTCTTTGCGTCAGCATCGCTGGCCGTGCAGA 6789 Query 25401 CGACGCCGAGCACGGCCGTCGACACTGAGCGAATCGGGCGGCCGCCTTCGTTGATTTCGA 25460 | | ||||| | ||||||||| || | | ||| | ||| ||| ||||| || |||| Sbjct 6788 CCATGCCGATGATGGCCGTCGAAACGGTGGAAATGGTGCGCGTGCCATCGTTAATCTCGA 6729 Query 25461 TGACGCGTACGCCGTGGTGGTAATC 25485 |||| |||||||| || || || Sbjct 6728 TGACCTCGACGCCGTGATGATAGTC 6704 Score = 87.8 bits (96), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 29808 GCGTAGGCGAGCAGCAGGCCGCGCGCCTTGTCGTTGATGAGCTGCCGCAGCAGGACTTCG 29867 |||||||| |||| | | ||||| ||||||| | |||| ||| | ||||| Sbjct 2965 GCGTAGGCCAGCATGACCGCACGCGCGGCCTCGTTGACGCGCTGTCGCCAGATAACTTCC 2906 Query 29868 CGATAGGCGTTTTCCTGAAGGACGCGCGTCAC---GGGCTCGGATTCGAGCGCGAGCGT- 29923 || |||||||||||||| || | || |||| |||||||| || |||| ||||| Sbjct 2905 CGGTAGGCGTTTTCCTGCAGCA---GCTTCACCAGCGGCTCGGACTCAAGCGACAGCGTG 2849 Query 29924 CGCGGCGATTTCCGCCTGGTGCTCGGGCGGATACAGCGACACGAGGCGCGCCTTGCGCTC 29983 ||| |||||| | |||| || || ||| || ||||| ||||| |||||| || || Sbjct 2848 CGC-GCGATTGCGTCCTGCTGGTCTTCCGGGTATAGCGAGACGAGTGTCGCCTTTCGTTC 2790 Query 29984 GGCGAACAGCGTCTCGAAGTCGAGCGGGTCGACGATGTCCGGCGCGGGGAGCTG 30037 | | | || || |||| || || |||| ||| ||||||| |||||| Sbjct 2789 GCTCAGGATGGTTTCATAGTCCAGTTCTTCCACGACGTCAGGCGCGGCGAGCTG 2736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117283901359856