Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq1001 324 3e-84 >seq1001 Length=29257 Score = 324 bits (358), Expect = 3e-84 Identities = 673/994 (68%), Gaps = 40/994 (4%) Strand=Plus/Plus Query 19039 ATCGGCAAGGCCGGCGACAAAGGCACGCTCGCCCACACGCTCGACGCCATCACCGACCAG 19098 ||||| || ||||| | ||||||||||| || | | || | |||||| |||||||| Sbjct 6866 ATCGGTAAAGCCGGTAAAAAAGGCACGCTGGCAAAATCCCTGCAGGCCATCGCCGACCAG 6925 Query 19099 ACCAACCCGCTCACGGTCGTGGTGCGCGTCGCCGGCGGTGCTTCCGA------------- 19145 ||| ||| ||| || ||||||||||| | | |||| ||| Sbjct 6926 TGCAAACCGGTCATTGTGGTGGTGCGCGTTCCAGAAGGTGTCGACGACCCGGCAGACCCG 6985 Query 19146 -----GGCCGAGA------CCACGTCCAACCTGATCGGCACCACCAACGCGGCCGGCCGG 19194 ||| ||| ||| |||||| | |||||||| ||| ||| |||| Sbjct 6986 GAAGCGGCGCAGAAAGAAACCATTTCCAACATCATCGGCACGACCGACGAAAACGGCAAA 7045 Query 19195 TACACCGGCATGAAGGCGCTGCTGACCGCCCGCAACCGTTTT-GGCGTCGCGCCGCGCAT 19253 |||||||| |||| |||||| | || || |||||| ||||| ||||||||| Sbjct 7046 TACACCGGGCTGAAAGCGCTGTTAACGGCGAA-AACCGTCACCGGCGTTAAGCCGCGCAT 7104 Query 19254 CCTGGCTGTGCCGGGGCTCGACAGCCTGCCAGTCGGGACCGAGCTGG--TCACCATCGCG 19311 || | ||||||||||| || | | | ||| | ||||| ||| | ||| | | || Sbjct 7105 TCTCGGCGTGCCGGGGCTGGATACGCAGGAAGTGGCGACCGCGCTTGCGTCAACCT-GC- 7162 Query 19312 CAGAAGCTGCGCGCCTTCGCCTACCTGTCGGCGTACGGCTGCCAAACCAAGGAAGAGGCC 19371 |||| |||||||| |||| |||| | |||| |||||| | |||| || ||| Sbjct 7163 CAGAGCCTGCGCGCGTTCGGCTACGTAAGCGCGTGGGGCTGCAAGACCATTTCCGACGCC 7222 Query 19372 GTCGCCTACCGCAGCAACTTCGGCCAGCGCGAAGCGATGGTGATGTGGCCGGATTTCGTC 19431 || ||||| || ||| |||||||||| |||||| || || || || | Sbjct 7223 ATCAAATACCGTGAGAATTTCAGCCAGCGCGAGCTGATGGTCATTCACCCTGACTTTCTG 7282 Query 19432 GGCTGGGATACCGCCGCCAATGCCGAGACC-ACCCTG--TGGGCCACGGCCCGCGCGGTC 19488 | ||||| ||| | || || ||| ||| | || ||||| || ||||||||| || Sbjct 7283 GCATGGGACACCACGGCGAA---CGAAACCGATATTGCATGGGCGACCGCCCGCGCGCTC 7339 Query 19489 GGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCACAAGACGCTTTCCAACGTGGCG 19548 ||| |||||||||| |||||| | || ||||| |||||||| ||||| || ||||| | Sbjct 7340 GGCCTGCGCGCCAAAATCGACCAGGAGACCGGATGGCACAAAACGCTGTCTAACGTTGGC 7399 Query 19549 GTGGGCGGCGTGACCGGTCTGTC-GCGCGACGTGTTC-TGGGACCTTCAGGACCCGGCGA 19606 ||| ||||| ||||| ||| |||| || || ||||| | ||||| | ||| | Sbjct 7400 GTGAATGGCGTCACCGGC--GTCAGCGCCTCGGTCTCATGGGATTTGCAGGAGCAGGCTA 7457 Query 19607 CCGACGCGGGCTACCTGAACGCCAACGAGGTGACCACGCTGGTTCACCGCGACGGCTACC 19666 ||||||| | ||||| || |||||| ||||| | | | |||||||| Sbjct 7458 CCGACGCCAACCTGCTGAATCAGGCCGGGGTGACAACGCTAATCCGCAACGACGGCTTTA 7517 Query 19667 GCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGCTGTTCGCCTTCGAGAACTACACCC 19726 ||||||||| || || ||| | ||||| | |||| || || |||||||||| Sbjct 7518 AGTTCTGGGGCAACCGTACCTGCTCGGACGATCCTTTATTCGTGTTTGAAAACTACACCC 7577 Query 19727 GCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAGCACACATGTGGGCGAACGACCTAC 19786 |||| |||||||||||||||||||| |||||||| || ||| |||||||| ||| | Sbjct 7578 GCACGGCGCAGGTGCTGGCCGACACGATGGCGGAGGCGCACGCGTGGGCGATGGACAAGC 7637 Query 19787 CGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGGGCATCAATGCCAAGTTGCGCATGC 19846 | | | | || || | ||||| | | | || ||||||||||| || ||| || Sbjct 7638 CCGTTTCCGCAACGCTTATCCGCGACATTGTCGCCGGTATCAATGCCAAATTCCGCGAGC 7697 Query 19847 TGACCCGCAACGGATACCTGCTGGGCGGCGCCGCGTGGTTCGACGCGGACGCCAACAGCA 19906 ||| ||||| || | | | ||| | |||| |||| |||| | |||| | Sbjct 7698 TGAAAAATAACGGCTATATCGTTGACGGGTCATGCTGGTACGACCCGGAGTCAAACACCG 7757 Query 19907 AGGACACGCTGAAGGCCGGGCAACTCGCCATCGACTACGACTACACGCCCGTCCCACCTC 19966 ||| || ||||| |||||| | || ||||| ||||||||||| |||||||| || | Sbjct 7758 TGGAAACCCTGAAAGCCGGGAAGCTGTATATCGATTACGACTACACCCCCGTCCCGCCGC 7817 Query 19967 TGGAGAACCTCACGTTCCGCCAGCGCATCACCGA 20000 |||| ||||| || | ||||||||||||||||| Sbjct 7818 TGGAAAACCTGACCCTGCGCCAGCGCATCACCGA 7851 Score = 297 bits (328), Expect = 5e-76 Identities = 886/1345 (66%), Gaps = 38/1345 (3%) Strand=Plus/Plus Query 14361 ATGGCCATCATCGACCTGTCGCAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGACTAC 14420 ||||| || | ||||| ||||| | ||||| | ||| || ||| || ||||| Sbjct 2715 ATGGCAATTGTTGACCTTAACCAGCTCGCCGCGCCTGACGTCGTGGAAGAACTGGACTAT 2774 Query 14421 GAAGCCATCCTGGCCGAGCGGAAAGACTACTTT-GTGTCGCTGCACCCCGCCGACCAGCG 14479 ||| |||||||| ||| || |||| | || | || ||||| |||| | ||||||| Sbjct 2775 GAAACCATCCTGAGCGAACG-AAAGGCGACACTCGTCTCGCTATACCCGGAAGACCAGCA 2833 Query 14480 GGACGCCG-CGCGCGCCACGCTGGCGCTGGAATCCGAGCCGATCACCAAGCTCTTGCAGG 14538 |||||| ||||||| |||||| |||| || ||||||||| | ||||| |||||| Sbjct 2834 GGACGCAATCGCGCGC-ACGCTGTCGCTTGAGTCCGAGCCGCTGGTGAAGCTGCTGCAGG 2892 Query 14539 AGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGTGGGGTCA 14598 | ||||||||||| || | | ||||| |||||||| ||||| || ||||||| ||||| Sbjct 2893 AAAACGCCTACCGGGAAGTTATCTGGCGACAGCGCGTCAACGAGGCCGCGCGTGCGGTCA 2952 Query 14599 TGCTGGCCTTCGCCGAAGGGGAAGACCTGGAGCAGATTGCGGCGAACTTCAACGTGCAGC 14658 ||||||||| ||| | ||| ||||| || ||||| | | || | |||||| ||| Sbjct 2953 TGCTGGCCTACGCTGCAGGAAGCGACCTTGACCAGATAGGCGGAAATTACAACGTTGAGC 3012 Query 14659 GTCTGACCATCACGCCGGCTGACACCACCACCGTGCCGCCGACGCCCGCCGTGATGGAGG 14718 | || ||||| || || ||| ||| || | ||||||||||| |||||||||||| Sbjct 3013 GCCTTGTTATCACCCCTGCAGACGACACGACGTTACCGCCGACGCCTGCCGTGATGGAGT 3072 Query 14719 GCGACGACTCGCTGCGCGAGCGCGCA--CAGGAAGCGTTTGAAGGGCTGTCCGTGGCCGG 14776 ||| || || | || ||||| ||| | || ||||| |||||| || || Sbjct 3073 CGGAC-ACCGACTAC-CGTCTGCGCATTCAGCAGGCCTTTGAGGGGCTGAGTACCGCAGG 3130 Query 14777 CCCGACCAAGGCCTACGAGCAGTT---CGCGCGCTCGGCTGACGGCCGGGTGGCGGACGC 14833 | | ||| | || | | ||||| || ||| |||||||| ||||| || || Sbjct 3131 CTCTACC---GGCTCCTATCAGTTTCACGGTCGCAGCGCTGACGGGCGGGTCGCCGATAT 3187 Query 14834 GCGCGCGATCAG-CCCG-GCCGGCGCGGAGGTGGTGGTCTCGGTGCTGTCGCACCTGAAC 14891 | ||||| |||| || ||| | ||| || ||||||| || | | || Sbjct 3188 TTCGGTCATCAGTCCCGAACCTGCGTG--CGTGACCGTTACGGTGCTTTCCCGCGAAAAT 3245 Query 14892 GACGGC---GCGGCCGACGAGAGCCTGCTGGCGGCTGTACGCACCGCGTTGAGCGATGAC 14948 ||||| ||| | |||||| ||||| || |||| |||| ||| |||||| Sbjct 3246 AACGGCGTGGCGTCTGACGAG---CTGCTCAACATCGTGCGCAACGCGCTGAACGATGAA 3302 Query 14949 GATACCCGGCCGCTCGGCGACCGCCTGACGGTGCAATCCGCCACCATCGTCCCATACCGC 15008 || | ||||| ||| |||||| |||| |||| || || | ||| || || Sbjct 3303 GACGTCAGGCCGGTCGCTGACCGCGTGACCCTGCAGTCGGCGAACATTATCGACTATAAA 3362 Query 15009 ATCCGTGCCACGCTGTACCTGGCATCGGGGCCGGCGGCCGAGCCGATCCTGGACGCGGC- 15067 ||| || |||| ||||| | || || | |||||| | || || || Sbjct 3363 ATCACCGCGTCGCTTTACCTTTACCCCGGTCCCGAAAGCGAGCCTGTGCTCAGTGCTGCG 3422 Query 15068 -TGGCAAGCGGGCCGACGTCTACCGCACCACGCGGCGGCGCATCGGTCGCGACATCAACC 15126 |||| || | ||| || |||| ||| || || |||| ||||| ||| | Sbjct 3423 AAAGCAAAGCTGCAGGCGTATA--TCACCGCGCAGCACCGGCTCGGGCGCGATATCCGCA 3480 Query 15127 GCTCGGCGATCACGGCGGCGCTGCATGTGGAGGGCGTGGAAAAGCTGGTGCTGCACGAAC 15186 ||||| || || ||||| ||||| ||||||||| | | | |||| ||||| Sbjct 3481 AATCGGCCATTTATGCCGCGCTCCATGTTGAGGGCGTGCAGCGCGTCGAGCTGGCCGAAC 3540 Query 15187 CGGCCGAAGACATCGCGCTCGATCTGACGCAGGCGGGCTACTGCACCGGCGTGGATATCG 15246 ||| | ||||||| |||||| || || ||| | |||| || | | || Sbjct 3541 CGGTGGCCGACATCGTTCTCGATGACACACAAGCGTCATGGTGCAGCGACTACGCCGTCA 3600 Query 15247 TCAACGGGGGCACCAGTGAGTAGCGCAACCCTGTTGCCGCCGAACGCGACGCCGCTGGAG 15306 || ||||||| | ||| | | |||| ||||| | | || | ||||| ||| Sbjct 3601 CCATAGGGGGCAACGATGAATGATACCCGCCTGCTGCCGGTGGGCTCGTCACCGCTTGAG 3660 Query 15307 CGTCGC-GCCGCGCAGACGGGCGCACGCATCGAACGCGTGCCGGTGCCGCTGCGCGACCT 15365 || || || |||| | |||| || ||| || || |||||||| || Sbjct 3661 -GTGGCGGCGGCGCGCGCCTGCGCTGAGATTGAAAATACCCCCGTTCCGCTGCGTCGTCT 3719 Query 15366 GTGGAACCCAGCCACCTGTCCGGCCGAGCTGTTGCCCTTCCTGGCCTGGTCGTTTTCCGT 15425 |||| || | | ||| ||||| | ||| |||| | ||||| ||| |||||||||| Sbjct 3720 CTGGAGTCCTGACGACTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCCGT 3779 Query 15426 GGACCGCTGGAACCCGGCCTGGCCGCTCGCCACCAAGCGCGCCGTGACGGCCGCCTCCTA 15485 ||||||||| || | ||||||| ||||| ||||| | |||| ||| | | Sbjct 3780 TGACCGCTGGGACGAGAACTGGCCGGAGGCCACAAAGCGGGATGTGATCCGCGCGGCGTG 3839 Query 15486 CTTCGTGCA-CCGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGGAGCCGCTGG 15544 || | || ||| | || || ||||| || || | ||||||| ||||||||| || | Sbjct 3840 GTTTATCCATGCGC-ACAAAGGAACGATTGGGGCAGTGCGCCGCGTGGTGGAGCCCCTCG 3898 Query 15545 GCTTCCTGATTCGCGTCATCGAGTGGTGGCAGACCAACCCGCCCGGGCCGCGCGGGTCGT 15604 ||| ||||||| ||| ||||||||| | ||||| || || | ||| ||| Sbjct 3899 GCTACCTGATTAACGTGTCGGAGTGGTGGGAAACCAA------CGACCCACCCGGCACGT 3952 Query 15605 TCGGGCTCGATGTGGGCGTGCTGCAAACCGGCATCGACGAGGCCATGTACGCCGAGCTGG 15664 | | |||||| | || ||| | | ||||||||| ||||| ||||| |||| ||| Sbjct 3953 TTCGCCTCGATATCGGTGTGTTAGAGACCGGCATCACCGAGGAAATGTATTACGAGATGG 4012 Query 15665 AACGCCTCATTGACGACGCCAAGCC 15689 | || ||||||| ||| || ||||| Sbjct 4013 AGCGGCTCATTGCCGATGCAAAGCC 4037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123907760243816