Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq997 266 1e-66 seq960 93.3 1e-14 >seq997 Length=29618 Score = 266 bits (294), Expect = 1e-66 Identities = 368/510 (72%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 45793 AAAGGCGCATGTGACCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGC 45852 ||||||||||| || | ||| || |||||||| | ||||| || || || |||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGG- 18306 Query 45853 CTGA-TGACTCGTCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCAGA 45911 ||| | || || || |||| |||||| ||| |||| |||||| || ||||||| || Sbjct 18305 GTGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 45912 GTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCGTGGGCGGTC 45971 |||||||||| |||| |||| | ||||||||| | | |||| || | |||||| | Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 45972 AATCATTACCGTGATAACGCCATCGCCTACAAAGAACAGCGTGATAAAAAAGTCAGTGAG 46031 || || || || || ||||||||| |||||||||| ||||| ||| |||| || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGAT---AAAGCCACTGAG 18129 Query 46032 ---CTGAAGCAGGCGACCGCCACCATCGCTGACATGCAGCAGCGTCAGCGTGATGTTGCT 46088 || | ||||| | |||||||||| ||||||||| || |||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 46089 GCGATCGATGCAAAATACACGAAGGAGTTAGCCGATGCGAAAACTGAAAATGAAACTCTG 46148 ||| | ||||| |||||||| || || ||||||||| | | ||| |||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 46149 CGCGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGGTCAATGCCAGTTGCTCCGCAGCC 46208 | ||||| ||||| |||||||| |||| | |||| || | || || || Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTG-TC-----CC 17955 Query 46209 GTGCGTGAAGCCACCGGACCCACCAGCATGGATAATGCAACCAGCCCCCGACTGGCAGAC 46268 | | | ||| ||||| || | |||||| |||| || ||||| |||| | ||| Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 46269 ACCGCTGAACGGGATTATTTCACCCTCAGA 46298 ||||||||||||||||||||| ||||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGA 17865 >seq960 Length=33163 Score = 93.3 bits (102), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15909 TACAGCGGTATCTGGGACGGAACGTTAAAACCGGCATACAGCAACAACATGGCCTGGTGT 15968 |||||||| | |||||||| || || || |||| | | | ||||| ||||||| | Sbjct 13079 TACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGA-T 13137 Query 15969 CTG-TGGGATATGCTTACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGA 16027 || | || |||| || | ||| || ||| | ||| | | || || || | Sbjct 13138 CTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCA 13197 Query 16028 TGTGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGG 16087 ||||| || |||| |||||| |||||||||||||||||||||| | ||| | || || Sbjct 13198 GGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGG 13257 Query 16088 CTTTGGCGGCACGGAGCCGCGCATCACCTGTAA 16120 | |||||||| ||||||||| | ||||| || Sbjct 13258 CAAGGGCGGCACCGAGCCGCGCTTTACCTGCAA 13290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150342397074924