Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq1039 235 2e-57 >seq1039 Length=27060 Score = 235 bits (260), Expect = 2e-57 Identities = 450/651 (69%), Gaps = 18/651 (3%) Strand=Plus/Plus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || ||| |||| | ||| |||||||| ||||||||||||| || || | |||||||| Sbjct 14256 TCCTCGTACATGATGTACGGATAGCCGGACTCAAACTGAATTTCGGCAAGCGTCTGGAAG 14315 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTA--GCG-ATCCTATCATCTTTTAGCCACGTGTCG 60026 | | || |||| ||| ||| || ||| || | ||| || ||| | |||| Sbjct 14316 AAATCGCGGGCGTTGAT---GGTTTTTTTGCGGATGCGATCGTCGGCCAGCAGCTCGTCG 14372 Query 60027 TACATCTCGGTTACGGAGAACTCGGACAGTGACTTT-CCGTACACCTTATTGATGTCATA 60085 |||| |||| ||| | | ||| || | |||| ||||| | | | |||||| Sbjct 14373 TACAGCTCGCTTATCGCCACGTCGC-CAAAGGCTTTGCCGTAAATTCGCTCAACGTCATA 14431 Query 60086 AGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAAC 60145 || ||||| || ||||| | |||| || || || || |||| ||| || | Sbjct 14432 CGGCGAGAAAAGCGCCATGTCGGCATTCTCTTTAGCCAGCTTAAAGGTGATATCCGGGAT 14491 Query 60146 GATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGT 60205 | || || || || || || || || ||||| || |||||||||||||| |||||||| Sbjct 14492 CACCACGCCCAGCGACAGGGTTTTGATGCGGATTTTTTCGTCGGCGTTTTCGCGCTTGGT 14551 Query 60206 ATCCAGG-AACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCT 60264 ||| ||| ||||| || |||||||||||||| |||| || ||| ||||| || ||||||| Sbjct 14552 ATCGAGGAAACGC-AGAATGTCGGGGTGGTGCGCGTGCAGATAAACCGCGCCCGCGCCCT 14610 Query 60265 GCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGA 60324 | | || || || ||||| | |||||||||| |||||| || |||||||| || |||| Sbjct 14611 GACGCGCGCCAAGCTGGTTGGCGTAGGAGAAGGCATCTTCCAGCATCTTCATGACCGGGA 14670 Query 60325 TGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGG 60384 | || || |||| ||| ||| || ||||||||| || || || || || ||||| | Sbjct 14671 TCACGCCGGAGGACTGGTTTTCGATACGCTTAATCGGCGCGCCCGCTTCACGCAGGTTCG 14730 Query 60385 AGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAG---AGAGTCCTGAACGA 60441 ||| || | || ||||| || || || || ||||| || |||| | || Sbjct 14731 AGAGCAGAAACGCCACGCCGCCGCCGCGTTTGGAGAGCTGCAGCGCCGAGTTC---ACCG 14787 Query 60442 TTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGC 60501 || || || ||| |||| | || | || || | |||||| || || ||| || Sbjct 14788 CGCGGCCTATCGACTCCATATTATCTTCAATGCGCAGCAGGAAGCAGGAGACCAGCTCGC 14847 Query 60502 CTGCGTCGAGAAGCCCCGC-GTTGAGGAAGGTCGGAGTTGCAGGCTGGAAG 60551 | ||| | | |||| |||||| |||||||| || |||||||||||| Sbjct 14848 C-GCGCTGGGCTTTGCCGCAGTTGAGAAAGGTCGGCGTGGCAGGCTGGAAG 14897 Score = 140 bits (154), Expect = 1e-28 Identities = 289/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 58392 TACAAAGCGCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCG--ACTTAGCAGAGG 58449 |||| |||||| | ||| ||||| | ||| |||||||| | || | | || ||| Sbjct 13221 TACAGCGCGCAGGACACGCAGCCTTCGATTTCGGTGCCTTCCAGCGCAAGCTGGCGCAGG 13280 Query 58450 TTCGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAA 58509 || |||||||| || | ||| | || ||||| ||||||||||||||| ||| | Sbjct 13281 --CGAATGTAGTAGAGCGTCTTGATACCTTTCTTCCACGCGTAGATCTGCGCTTTGTTGA 13338 Query 58510 TGTCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCC 58569 |||| ||||| || || ||||| |||||||||||||| || |||| ||||| || || Sbjct 13339 TGTCCCGCGTGGTGGCGGTATCCGGGAAGAACAGCGTCAGCGACAGCCCCTGATCCACGT 13398 Query 58570 AAGGAGATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CT 58627 | || | ||||| |||| ||||| | || || || |||| ||| || Sbjct 13399 GTTTCGTCGCCTCGGCGTAGGTATCGATGATTTTTTCCGGGCCAATCTCGTATGCGTCCT 13458 Query 58628 -ATCAATTGATTCTACATTCTCATTGGTC--ACTCCGTACTGAGGGTAATAGACTCGACC 58684 || | | | | ||||| |||||| | | | | |||||| || || || || Sbjct 13459 GATACAGCG---CCAGGTTCTCGTTGGTCATAAACGGGGC--AGGGTAGTAAACGCGTCC 13513 Query 58685 AAGCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGC 58744 || || || ||||||| |||| || | |||||||| | |||||| Sbjct 13514 GGTTTTGCCTTCTTTGCGAATTTCAATCTTCGACACGATCGGGTGAATGCTCGACGTGGC 13573 Query 58745 ATGGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAAT 58804 ||||| ||||| ||||||||||||||||| || | |||||| |||||||||||||| || Sbjct 13574 GTGGTTGATGTAGGAGATAGAGCCGGTTGGCGGCACCGCCTGCAGGTTCTGGTTGTAGAT 13633 Query 58805 ACC 58807 || Sbjct 13634 GCC 13636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225723064598360