Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_009821.1
Length=164270
Score E
Sequences producing significant alignments: (Bits) Value
seq236 176 5e-39
seq637 125 8e-24
seq962 82.4 8e-11
>seq236
Length=545527
Score = 176 bits (194), Expect = 5e-39
Identities = 145/177 (82%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386
||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||
Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827
Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446
||||| |||||||| |||||||| || ||||||||||| || || || || ||||| ||
Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767
Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503
||||| || | |||| || || |||||| || || | |||||||||||||| ||
Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCAC 30710
>seq637
Length=122170
Score = 125 bits (138), Expect = 8e-24
Identities = 131/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53390
|| || ||||| | ||||||||| ||||||| ||| |||||| || || || ||
Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178
Query 53391 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53450
||||| ||||| || || || || ||||| || || |||||||||||||| | || ||
Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238
Query 53451 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGA 53502
|||| |||||| || || |||||| || |||| ||||||||||||||||
Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGA 107290
>seq962
Length=32987
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34487 TCAAAGTCGATTTTCTCAAATGGAGTGACTTTCCGGTCTACGTCGAGGTGGAATGAGTTG 34546
||||||||||| || || | || | || ||| || |||||||||||||| ||||
Sbjct 24302 TCAAAGTCGATCTTGTCGTACGGGTTTACCTTCTTCTCCACGTCGAGGTGGAAGCTGTTG 24361
Query 34547 GTGTACCAGTCTTTATCGGTAGCGCCCTTAACAATACCAAATTGCTCTCGGTCCAGTCGA 34606
||||| | |||||||||| |||| | || || || || | | |||||| ||
Sbjct 24362 GTGTAGTAACCTTTATCGGTCACGCCTTCCACGATGCCGAACTCGGCGGTGTCCAGACGG 24421
Query 34607 TTAAATCGATAGCAAAGGCTCTCGGCTGGCGTACCGTAAAGACT-AAACCCAAGTCCGGT 34665
|| || | ||| ||| ||||| ||| |||| ||| || || ||||| || |||||
Sbjct 24422 CAGAAGCGGTCGCACAGGTTCTCGCTTGGGGTACTGTACAGGCTGAAACCGTAG-CCGGT 24480
Query 34666 TTCGTCCTTCCA 34677
||| || |||||
Sbjct 24481 TTCCTCTTTCCA 24492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 525524214855200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |