Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq236 176 5e-39 seq637 125 8e-24 seq962 82.4 8e-11 >seq236 Length=545527 Score = 176 bits (194), Expect = 5e-39 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||| Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||||| |||||||| |||||||| || ||||||||||| || || || || ||||| || Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 ||||| || | |||| || || |||||| || || | |||||||||||||| || Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCAC 30710 >seq637 Length=122170 Score = 125 bits (138), Expect = 8e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 53331 GTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCGCACC 53390 || || ||||| | ||||||||| ||||||| ||| |||||| || || || || Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 53391 GCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGCGTCC 53450 ||||| ||||| || || || || ||||| || || |||||||||||||| | || || Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238 Query 53451 AGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGA 53502 |||| |||||| || || |||||| || |||| |||||||||||||||| Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGA 107290 >seq962 Length=32987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34487 TCAAAGTCGATTTTCTCAAATGGAGTGACTTTCCGGTCTACGTCGAGGTGGAATGAGTTG 34546 ||||||||||| || || | || | || ||| || |||||||||||||| |||| Sbjct 24302 TCAAAGTCGATCTTGTCGTACGGGTTTACCTTCTTCTCCACGTCGAGGTGGAAGCTGTTG 24361 Query 34547 GTGTACCAGTCTTTATCGGTAGCGCCCTTAACAATACCAAATTGCTCTCGGTCCAGTCGA 34606 ||||| | |||||||||| |||| | || || || || | | |||||| || Sbjct 24362 GTGTAGTAACCTTTATCGGTCACGCCTTCCACGATGCCGAACTCGGCGGTGTCCAGACGG 24421 Query 34607 TTAAATCGATAGCAAAGGCTCTCGGCTGGCGTACCGTAAAGACT-AAACCCAAGTCCGGT 34665 || || | ||| ||| ||||| ||| |||| ||| || || ||||| || ||||| Sbjct 24422 CAGAAGCGGTCGCACAGGTTCTCGCTTGGGGTACTGTACAGGCTGAAACCGTAG-CCGGT 24480 Query 34666 TTCGTCCTTCCA 34677 ||| || ||||| Sbjct 24481 TTCCTCTTTCCA 24492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525524214855200