Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq197 136 9e-27 seq1030 109 1e-18 >seq197 Length=620651 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| | |||| ||| ||||| || || || ||||| | Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| || || || || ||||||||||||||||| || ||| Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTG---GTCTGGA 447050 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || ||||| || || || |||| |||| | || Sbjct 447051 GGGATGCCCTCCTTGTCCTGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCG 447110 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || || || |||||||||||||| |||||||| Sbjct 447111 ACCTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||||| | |||| ||| || || || || || ||||||| Sbjct 447878 CCTCCGCGCAGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 447937 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||||| ||| || || ||||||||||||||||| || ||| Sbjct 447938 AGGGTGCGGCCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTG---GTCTGGG 447994 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || || || || || || || | || | ||| Sbjct 447995 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCA 448054 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || ||||||||||| ||||| ||||||||| Sbjct 448055 ACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 448105 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | |||| ||| || |||||||| || ||||||| Sbjct 446250 CCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 446309 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||||| || |||||||| |||||||| || |||||| Sbjct 446310 AAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGG---TCTGGG 446366 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | || | ||| Sbjct 446367 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCA 446426 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||| || ||||||||||| ||||| ||||||||| Sbjct 446427 ACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 446477 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | | || || |||||||||| |||||| || |||||| Sbjct 446742 TCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAG 446801 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| ||||| || || ||||| || || ||||| || Sbjct 446802 ATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTC 446861 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || ||||| ||||| || || || || || ||| Sbjct 446862 TCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACG 446921 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 446922 AAAATCTGCAT 446932 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||||||||| | | || || |||||||||| |||||| || |||||| Sbjct 448899 TCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAG 448958 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||||| ||||| || || ||||| || || ||||| || Sbjct 448959 ATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTC 449018 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || ||||| ||||| || || || || || ||| Sbjct 449019 TCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACG 449078 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 449079 AAAATCTGCAT 449089 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| | ||||| |||||||| | || || || |||||| Sbjct 449602 TCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAG 449661 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 449662 ATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCTGGATCTTCGCCTTAACGTTC 449721 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | ||||| || ||||| ||||| ||||| ||| Sbjct 449722 TCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACG 449781 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 449782 AATATCTGCAT 449792 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||||| | || ||||||| || || || ||||| || ||||| | Sbjct 446477 TCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 446536 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| |||||||||| || || || ||||||||||||||||| || || Sbjct 446537 TAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 446596 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| || || || || || || || | || | ||| || Sbjct 446597 AATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGAC 446656 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 446657 TTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||||| | || ||||||| || || || ||||| || ||||| | Sbjct 448105 TCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 448164 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| |||||||||| || || || ||||||||||||||||| || || Sbjct 448165 TAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 448224 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| || || || || || || || | || | ||| || Sbjct 448225 AATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGAC 448284 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || ||||| ||||| || ||||| || || ||||| |||||||| Sbjct 448285 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| | ||||| || || || | ||||| || |||||| Sbjct 447686 TCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCAGCGAAG 447745 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| || || || || ||||| || || ||||| || Sbjct 447746 ATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTC 447805 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || ||||| ||||| || |||||||| |||||| Sbjct 447806 TCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACG 447865 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 447866 AAAATCTGCAT 447876 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| | ||||| || || |||| || || || |||||| Sbjct 448399 TCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCTAGCTGGTTGCCGGCGAAG 448458 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| || |||||| ||||| ||||| || ||||| || ||||| || Sbjct 448459 ATCAACCTCTGCTGG---TCTGGGGGAATTCCCTCTTTGTCTTGGATCTTGGCTTTGACA 448515 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || || | ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 448516 TTCTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTG 448575 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 448576 ACAAAGATCTGCAT 448589 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 |||||||| ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 448725 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTG 448784 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || || | || | ||| ||||| || ||||| ||||| || |||||||| Sbjct 448785 ACATTCTCAATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTT 448844 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 448845 TTCACGAAAATCTGCAT 448861 >seq1030 Length=27445 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || || || || || | ||||| || ||||| Sbjct 2709 TTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAA 2768 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| ||||| || ||||| || || || |||||||| || ||||| || || Sbjct 2769 GATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCTTTGACATT 2828 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || || || ||||| ||||| || || || ||||| || Sbjct 2829 TTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCAC 2888 Query 288462 GAATATCTGCATTATGTT 288479 ||| |||||||| |||| Sbjct 2889 GAAGATCTGCATATTGTT 2906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179627284906332