Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq486 158 1e-33
>seq486
Length=217039
Score = 158 bits (174), Expect = 1e-33
Identities = 312/459 (68%), Gaps = 2/459 (0%)
Strand=Plus/Minus
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
|||| ||| ||||||||| || | ||||| || ||| | || || ||||||||
Sbjct 176416 GCCAGCCCCACCCTGTTCTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTC 176357
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
|| | | |||| |||| |||| || || | ||||| || ||| | |||||
Sbjct 176356 ATCGCCATGAAGGACGACAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTA 176297
Query 94012 ATCTCAAAATACGCGGGGGGAATCGG-GATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070
|| || |||| |||||| || || || | ||| ||| || | | | || | || |
Sbjct 176296 ATATCCAAATCCGCGGGCGGCATAGGAGTTCA-TGTTCATTGCATCAGAGCGAAAGGCAC 176238
Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130
||||||| || || || ||| ||||||||| || || || ||||| || || | |||
Sbjct 176237 CTACATCGCGGGCACGAACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAA 176178
Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190
|||| |||||||||||||||||||||| || | | || || | ||||| |||||
Sbjct 176177 CAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTA 176118
Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250
|||||||| |||||||| ||| | | ||| | ||| || |||||| |||||
Sbjct 176117 CCTCGAGCCGTGGCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAA 176058
Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310
|| | | | || |||| || ||||| ||||| ||| | |||| || || |||||
Sbjct 176057 AGAGGAAGTGCGCGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAA 175998
Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCC 94349
| || ||||| ||| | ||||| ||| | || ||
Sbjct 175997 GAGGGTTGAGAACAACGAGGAGTGGAGCCTTATGTGCCC 175959
Score = 113 bits (124), Expect = 4e-20
Identities = 342/521 (66%), Gaps = 13/521 (2%)
Strand=Plus/Minus
Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787
||||||||||| | | ||||| || | ||| |||||||| || ||| | || || ||
Sbjct 175592 GAACCTGAACAAGATTATCGATGTTAATTACTATCCCGTCCCAGAAGCGAAAAAGTCTAA 175533
Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847
| ||| ||| || || |||||||| |||||||| ||| | || || || | || ||||
Sbjct 175532 CATGAGGCACCGACCTATCGGCATTGGCGTCCAAGGTCTGGCCGATGCTTTTGTATTGAT 175473
Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907
||| || || ||||| || | || | | ||| | ||||| |||| |||
Sbjct 175472 GCGCCTTCCTTACGAGAGTGAAGGAGCCCAGAAGCTCAATCAACAAATATTTGAAACCAT 175413
Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966
||||| ||||| | ||| | | | || ||| |||| | ||||| | |
Sbjct 175412 CTATTATGGGGCTTTAGAAGCTAGCTGTGAACT-GGCCGAAAAACTCGGCGTTT---ATG 175357
Query 94967 AATCGTTCCGCGGAT---CGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023
|| ||| || | || || ||| || || || || | || | |||||
Sbjct 175356 AAACGTATGCTGGTTGTCCGGCCAGTGAA---GGAATATTGCAATATGAAATGTGGGGAA 175300
Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC-AAACACGGT 95082
|| ||| | | |||| |||||| ||||| || || | | | ||||| ||
Sbjct 175299 AGACACCCACAGACCTGTGGGACTGGAGTGCTCTGAA-GCAGAAGATCGCGAAACATGGC 175241
Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142
|| ||| | ||| | |||||||||||||||| |||||||| || ||||| ||||||
Sbjct 175240 CTGCGGAACTCTCTGTTGCTGGCCCCCATGCCCACCGCCTCCACTGCACAGATTCTTGGC 175181
Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202
||||| || || || || || ||||| || ||| | ||| | || | || || | ||
Sbjct 175180 AACAATGAATCATTTGAGCCATTCACTTCAAACATTTACCAAAGAAGAGTTCTTTCTGGA 175121
Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGAC 95243
||||||| || ||||| | ||||| || || || || ||
Sbjct 175120 GAATTCCAGGTGGTCAACCATCACCTGCTTCGCGATCTCAC 175080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494712105832240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |