Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq486 158 1e-33 >seq486 Length=217039 Score = 158 bits (174), Expect = 1e-33 Identities = 312/459 (68%), Gaps = 2/459 (0%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||| ||| ||||||||| || | ||||| || ||| | || || |||||||| Sbjct 176416 GCCAGCCCCACCCTGTTCTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTC 176357 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | |||| |||| |||| || || | ||||| || ||| | ||||| Sbjct 176356 ATCGCCATGAAGGACGACAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTA 176297 Query 94012 ATCTCAAAATACGCGGGGGGAATCGG-GATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || || |||| |||||| || || || | ||| ||| || | | | || | || | Sbjct 176296 ATATCCAAATCCGCGGGCGGCATAGGAGTTCA-TGTTCATTGCATCAGAGCGAAAGGCAC 176238 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||||| || || || ||| ||||||||| || || || ||||| || || | ||| Sbjct 176237 CTACATCGCGGGCACGAACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAA 176178 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| |||||||||||||||||||||| || | | || || | ||||| ||||| Sbjct 176177 CAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTA 176118 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 |||||||| |||||||| ||| | | ||| | ||| || |||||| ||||| Sbjct 176117 CCTCGAGCCGTGGCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAA 176058 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | | | || |||| || ||||| ||||| ||| | |||| || || ||||| Sbjct 176057 AGAGGAAGTGCGCGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAA 175998 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCC 94349 | || ||||| ||| | ||||| ||| | || || Sbjct 175997 GAGGGTTGAGAACAACGAGGAGTGGAGCCTTATGTGCCC 175959 Score = 113 bits (124), Expect = 4e-20 Identities = 342/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||||||||||| | | ||||| || | ||| |||||||| || ||| | || || || Sbjct 175592 GAACCTGAACAAGATTATCGATGTTAATTACTATCCCGTCCCAGAAGCGAAAAAGTCTAA 175533 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | ||| ||| || || |||||||| |||||||| ||| | || || || | || |||| Sbjct 175532 CATGAGGCACCGACCTATCGGCATTGGCGTCCAAGGTCTGGCCGATGCTTTTGTATTGAT 175473 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 ||| || || ||||| || | || | | ||| | ||||| |||| ||| Sbjct 175472 GCGCCTTCCTTACGAGAGTGAAGGAGCCCAGAAGCTCAATCAACAAATATTTGAAACCAT 175413 Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 ||||| ||||| | ||| | | | || ||| |||| | ||||| | | Sbjct 175412 CTATTATGGGGCTTTAGAAGCTAGCTGTGAACT-GGCCGAAAAACTCGGCGTTT---ATG 175357 Query 94967 AATCGTTCCGCGGAT---CGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 || ||| || | || || ||| || || || || | || | ||||| Sbjct 175356 AAACGTATGCTGGTTGTCCGGCCAGTGAA---GGAATATTGCAATATGAAATGTGGGGAA 175300 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATC-AAACACGGT 95082 || ||| | | |||| |||||| ||||| || || | | | ||||| || Sbjct 175299 AGACACCCACAGACCTGTGGGACTGGAGTGCTCTGAA-GCAGAAGATCGCGAAACATGGC 175241 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 || ||| | ||| | |||||||||||||||| |||||||| || ||||| |||||| Sbjct 175240 CTGCGGAACTCTCTGTTGCTGGCCCCCATGCCCACCGCCTCCACTGCACAGATTCTTGGC 175181 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 ||||| || || || || || ||||| || ||| | ||| | || | || || | || Sbjct 175180 AACAATGAATCATTTGAGCCATTCACTTCAAACATTTACCAAAGAAGAGTTCTTTCTGGA 175121 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGAC 95243 ||||||| || ||||| | ||||| || || || || || Sbjct 175120 GAATTCCAGGTGGTCAACCATCACCTGCTTCGCGATCTCAC 175080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494712105832240