Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq1039 444 6e-120 >seq1039 Length=27060 Score = 444 bits (492), Expect = 6e-120 Identities = 672/951 (71%), Gaps = 16/951 (2%) Strand=Plus/Minus Query 155933 GCGCCATCAACTGGAACCGCGTGATC---GACGAGAAGGACGCGGAGGTGTGGAACCGGC 155989 ||||| | ||||||||| |||| |||||||| || ||| ||||||||||| | Sbjct 13191 GCGCCGTTAACTGGAACAA---GATCCAGGACGAGAAAGATCTGGAAGTGTGGAACCGCC 13135 Query 155990 TGACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGC 156049 |||||| |||||||||||||||||| ||| ||||| | ||||| || | | | | |||| Sbjct 13134 TGACCAGCAACTTCTGGCTGCCGGAAAAGGTCCCGCTCTCCAACGATATTCCGGCCTGGC 13075 Query 156050 ACCAGCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGC 156109 | |||| | | |||| | | | || || || || || |||||||||||| ||| Sbjct 13074 AAACCCTGAGCCACACCGAGCAGCAGCTAACGATCCGCGTCTTTACCGGCCTGACGCTGC 13015 Query 156110 TGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGC 156169 |||||||||| ||| ||||| ||||| | || || ||||| | || |||| Sbjct 13014 TGGACACCATTCAGAATACCGTTGGCGCACCGGCTCTGATGGGTGACGCGCTGACGCCGC 12955 Query 156170 ACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTAC- 156228 |||| ||||||||| | |||||| || |||||| |||||||| ||| |||| Sbjct 12954 ACGAAGAGGCGGTGATGTCGAACATCAGCTTTATGGAGGCGGTGCACGCCCGCTCCTACA 12895 Query 156229 --TCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGT 156286 |||| | ||||| ||||||||| ||||| || | ||||| || | | |||| Sbjct 12894 GCTCGA---TTTTCTCCACGCTGTGCCAGACCAAAGACGTGGACGCGGCCTACGCCTGGA 12838 Query 156287 CGGAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTG 156346 || | || || | || | ||||| ||| | ||||| | || || | | Sbjct 12837 GCGAAGCGAGCGAGTCGTTACAAAGAAAGGCGGAGCTGGTGCTGACGTATTATCGGGCCG 12778 Query 156347 ACGACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCG 156406 |||| ||||| ||| ||| ||||| | | | ||||| ||||| ||||| | Sbjct 12777 ACGAGCCGCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAATCATTCCTCTTCTATTCTG 12718 Query 156407 GCTTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGA 156466 |||||| ||||| |||| |||||| || ||||||||||||||||||||||| ||| Sbjct 12717 GCTTCTGGCTGCCCATGTACTGGTCAAGCCGCGGCAAGCTCACCAACACCGCCGATTTGA 12658 Query 156467 TCCGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGA 156526 | || |||||||||||||| || || |||||||| || ||||||||||| || | |||| Sbjct 12657 TTCGCCTCATCATCCGGGATGAAGCGGTGCACGGGTATTACATCGGCTATAAATATCAGA 12598 Query 156527 AGGGCCTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGC 156586 | || ||||| |||| | | | || | |||| || || | | | || Sbjct 12597 AAGGGCTGGAAAAGGTCAGCGACGCGGAGCGCGAGGAGCTTAAAGGGTTTGCGCTCGATT 12538 Query 156587 TGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCG 156646 ||||| | || |||| ||||||||||| | || ||| |||| || |||| || ||||| Sbjct 12537 TGCTGATGGATCTGTACGACAACGAGCTGAGCTATACCGAGGAACTGTACGCCGGCACCG 12478 Query 156647 GCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACC 156706 || | ||||||||||| ||||| | ||||||| ||||||||| ||| ||| | Sbjct 12477 GCTGGGAGGAGGACGTGAAAGCCTTCCTCTGCTACAACGCCAACAAGGCGCTGATGAATC 12418 Query 156707 TGGGCTACGACGCGCTGTTCAGCCGCAGCGACTG--CGACGTCAACCCGGCCATCCTGAG 156764 | |||||||||||||||||| |||| | |||| || || |||||||| || || Sbjct 12417 TCGGCTACGACGCGCTGTTC--CCGCCGGAACTGGCGGAGGTTAACCCGGCGATTCTCTC 12360 Query 156765 CGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTA 156824 ||||||||||||| | ||||| |||||||| |||||||| |||||||| |||| Sbjct 12359 CGCGCTGTCGCCCAACGCCGACGAAAACCACGATTTCTTCTCCGGGTCGGGTTCGTCGTA 12300 Query 156825 CGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATG 156875 ||| |||| ||| | |||| ||||| || || |||||||| || | ||| Sbjct 12299 CGTGATGGGCAAAGCGGTGGAAACCGAGGATGAGGACTGGGATTTTTAATG 12249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526586591030880