Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq58 109 4e-19 seq69 104 2e-17 seq575 102 6e-17 seq288 89.7 4e-13 seq1226 86.0 5e-12 seq726 86.0 5e-12 seq107 86.0 5e-12 seq113 84.2 2e-11 >seq58 Length=1261733 Score = 109 bits (120), Expect = 4e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||| || ||||||| | ||| ||| | || |||||||||||||| || || Sbjct 908673 CAGAACACAATATACGAGTGGGTCCGCGACCACCGAGTGCACCACAAGTACTCGGAGACC 908732 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 | || ||||| |||||||||||| | || |||| ||| ||||||| || ||||| ||| Sbjct 908733 TCCGCGGACCCGCACAACGCCAACCGAGGCTTCTTCTTCGCGCACGTCGGCTGGCTGATG 908792 Query 108568 ATGACCAAGGACCCCGACGT 108587 |||| ||| |||| ||||| Sbjct 908793 ATGAAGAAGCACCCTGACGT 908812 >seq69 Length=1177717 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||| | |||| ||||||| ||| ||| | | |||||||||||||| |||||| Sbjct 32589 CAGAACACGCTGACGCAATGGGTGCGCGACCACCGCCTGCACCACAAGTACTCGGACACG 32648 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 |||||||||| ||| |||||| | | || | | ||||| ||| | || ||||||||| Sbjct 32649 GCGGCCGACCCGCACGACGCCACCCGCGGCCTGTTCTTCTCCCACATCGGCTGGCTCATG 32708 Query 108568 ATGACCAAGGAC 108579 |||| ||| || Sbjct 32709 ATGAGGAAGAAC 32720 >seq575 Length=152088 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||||| | |||| ||||||| ||| ||| | | |||||||||||||| |||||| Sbjct 103335 CAGAACACGCTGACGCAATGGGTGCGCGACCACCGCCTGCACCACAAGTACTCGGACACG 103394 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 |||||||||| ||| |||||| | | || ||| ||||| || | || ||||||||| Sbjct 103395 GCGGCCGACCCGCACGACGCCACCCGCGGCCTCTTCTTCTCCCATATCGGCTGGCTCATG 103454 Query 108568 ATGA 108571 |||| Sbjct 103455 ATGA 103458 >seq288 Length=458581 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | |||||||| |||||||||||||||||||||||||| | ||||||||||| | Sbjct 267931 TGGCCATGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCGG 267990 Query 108941 CCGAGTTGGGGAACGAC 108957 ||||| |||| ||| || Sbjct 267991 CCGAGCTGGGCAACTAC 268007 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 |||| |||||| ||| | || |||||||||||||| || || || ||||| ||| || Sbjct 220974 TGGGCGCTCGACCACCGCGTGCACCACAAGTACTCGGAGACCTGCGCGGACCCGCACGAC 220915 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 | | | || ||||||||| |||||||||| ||||| || |||| | |||||| | Sbjct 220914 GTGAGGCGCGGCTTCTGGTTCGCGCACGTGGGCTGGCTGGTGCTGACGCCGCACCCCGCC 220855 Query 108586 GTG 108588 ||| Sbjct 220854 GTG 220852 >seq1226 Length=13906 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | |||||||| |||||||||||||||||||||||||| | ||||||||||| | Sbjct 6593 TGGCCATGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCGG 6652 Query 108941 CCGAGTTGGGGAACGAC 108957 | ||| |||| ||| || Sbjct 6653 CGGAGCTGGGCAACTAC 6669 >seq726 Length=83258 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 108767 GGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCG 108826 ||||| || | ||| ||| | || |||||||| || ||||| ||||||| || || | Sbjct 8669 GGTACACCTACGTCCTGAACGTGACCTGGCTGGTGAACTCGGCCGCGCACAAGTGGGGGG 8610 Query 108827 ACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTC 108886 || || | ||||||| |||| ||| || | || ||| || ||| | Sbjct 8609 ACAAGCCCTACGACAAGGACATCAACCCCGTGGAGACCAGGCCCGTGTCGCTCGTGGTGC 8550 Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||||||||| | ||||||||||||||| ||||| | ||||||||| |||||||| Sbjct 8549 TCGGCGAGGGCTTCCACAACTACCACCACACCTTCCCATGGGACTACAAGACCGCCGAGC 8490 Query 108947 TGGGGAACGACT 108958 | || || ||| Sbjct 8489 TCGGACACTACT 8478 >seq107 Length=927955 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 108767 GGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCG 108826 ||||| || | ||| ||| | || |||||||| || ||||| ||||||| || || | Sbjct 211981 GGTACACCTACGTCCTGAACGTGACCTGGCTGGTGAACTCGGCCGCGCACAAGTGGGGGG 212040 Query 108827 ACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTC 108886 || || | ||||||| |||| ||| || | || ||| || ||| | Sbjct 212041 ACAAGCCCTACGACAAGGACATCAACCCCGTGGAGACCAGGCCCGTGTCGCTCGTGGTGC 212100 Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 |||||||||| | ||||||||||||||| ||||||| ||||||||| | |||||| Sbjct 212101 TCGGCGAGGGCTTCCACAACTACCACCACACCTTCCCCTGGGACTACAAGACGGCCGAGC 212160 Query 108947 TGGGGAACGACT 108958 | || || ||| Sbjct 212161 TCGGACACTACT 212172 >seq113 Length=909154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 108474 CGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAG 108533 ||| ||| || | |||||| ||||| |||||| |||||||| ||||||||||| | Sbjct 360493 CGACCACCGGCTGCACCACCGCTACTCGGACACGGACGCCGACCCGCACAACGCCAAGCG 360434 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582 || |||| ||||||||||| || |||||||||| | ||| ||||| Sbjct 360433 AGGCTTCTTCTTCTCGCACGTCGGCTGGCTCATGACCAAGAAGCACCCC 360385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381764452776336