Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq58 109 4e-19
seq69 104 2e-17
seq575 102 6e-17
seq288 89.7 4e-13
seq1226 86.0 5e-12
seq726 86.0 5e-12
seq107 86.0 5e-12
seq113 84.2 2e-11
>seq58
Length=1261733
Score = 109 bits (120), Expect = 4e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
|||||||| || ||||||| | ||| ||| | || |||||||||||||| || ||
Sbjct 908673 CAGAACACAATATACGAGTGGGTCCGCGACCACCGAGTGCACCACAAGTACTCGGAGACC 908732
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
| || ||||| |||||||||||| | || |||| ||| ||||||| || ||||| |||
Sbjct 908733 TCCGCGGACCCGCACAACGCCAACCGAGGCTTCTTCTTCGCGCACGTCGGCTGGCTGATG 908792
Query 108568 ATGACCAAGGACCCCGACGT 108587
|||| ||| |||| |||||
Sbjct 908793 ATGAAGAAGCACCCTGACGT 908812
>seq69
Length=1177717
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
|||||||| | |||| ||||||| ||| ||| | | |||||||||||||| ||||||
Sbjct 32589 CAGAACACGCTGACGCAATGGGTGCGCGACCACCGCCTGCACCACAAGTACTCGGACACG 32648
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|||||||||| ||| |||||| | | || | | ||||| ||| | || |||||||||
Sbjct 32649 GCGGCCGACCCGCACGACGCCACCCGCGGCCTGTTCTTCTCCCACATCGGCTGGCTCATG 32708
Query 108568 ATGACCAAGGAC 108579
|||| ||| ||
Sbjct 32709 ATGAGGAAGAAC 32720
>seq575
Length=152088
Score = 102 bits (112), Expect = 6e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
|||||||| | |||| ||||||| ||| ||| | | |||||||||||||| ||||||
Sbjct 103335 CAGAACACGCTGACGCAATGGGTGCGCGACCACCGCCTGCACCACAAGTACTCGGACACG 103394
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|||||||||| ||| |||||| | | || ||| ||||| || | || |||||||||
Sbjct 103395 GCGGCCGACCCGCACGACGCCACCCGCGGCCTCTTCTTCTCCCATATCGGCTGGCTCATG 103454
Query 108568 ATGA 108571
||||
Sbjct 103455 ATGA 103458
>seq288
Length=458581
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| | |||||||| |||||||||||||||||||||||||| | ||||||||||| |
Sbjct 267931 TGGCCATGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCGG 267990
Query 108941 CCGAGTTGGGGAACGAC 108957
||||| |||| ||| ||
Sbjct 267991 CCGAGCTGGGCAACTAC 268007
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525
|||| |||||| ||| | || |||||||||||||| || || || ||||| ||| ||
Sbjct 220974 TGGGCGCTCGACCACCGCGTGCACCACAAGTACTCGGAGACCTGCGCGGACCCGCACGAC 220915
Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585
| | | || ||||||||| |||||||||| ||||| || |||| | |||||| |
Sbjct 220914 GTGAGGCGCGGCTTCTGGTTCGCGCACGTGGGCTGGCTGGTGCTGACGCCGCACCCCGCC 220855
Query 108586 GTG 108588
|||
Sbjct 220854 GTG 220852
>seq1226
Length=13906
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| | |||||||| |||||||||||||||||||||||||| | ||||||||||| |
Sbjct 6593 TGGCCATGGGCGAGGGCTGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCGG 6652
Query 108941 CCGAGTTGGGGAACGAC 108957
| ||| |||| ||| ||
Sbjct 6653 CGGAGCTGGGCAACTAC 6669
>seq726
Length=83258
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 108767 GGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCG 108826
||||| || | ||| ||| | || |||||||| || ||||| ||||||| || || |
Sbjct 8669 GGTACACCTACGTCCTGAACGTGACCTGGCTGGTGAACTCGGCCGCGCACAAGTGGGGGG 8610
Query 108827 ACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTC 108886
|| || | ||||||| |||| ||| || | || ||| || ||| |
Sbjct 8609 ACAAGCCCTACGACAAGGACATCAACCCCGTGGAGACCAGGCCCGTGTCGCTCGTGGTGC 8550
Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946
|||||||||| | ||||||||||||||| ||||| | ||||||||| ||||||||
Sbjct 8549 TCGGCGAGGGCTTCCACAACTACCACCACACCTTCCCATGGGACTACAAGACCGCCGAGC 8490
Query 108947 TGGGGAACGACT 108958
| || || |||
Sbjct 8489 TCGGACACTACT 8478
>seq107
Length=927955
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 108767 GGTACGCCCTCACCCTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCG 108826
||||| || | ||| ||| | || |||||||| || ||||| ||||||| || || |
Sbjct 211981 GGTACACCTACGTCCTGAACGTGACCTGGCTGGTGAACTCGGCCGCGCACAAGTGGGGGG 212040
Query 108827 ACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTC 108886
|| || | ||||||| |||| ||| || | || ||| || ||| |
Sbjct 212041 ACAAGCCCTACGACAAGGACATCAACCCCGTGGAGACCAGGCCCGTGTCGCTCGTGGTGC 212100
Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946
|||||||||| | ||||||||||||||| ||||||| ||||||||| | ||||||
Sbjct 212101 TCGGCGAGGGCTTCCACAACTACCACCACACCTTCCCCTGGGACTACAAGACGGCCGAGC 212160
Query 108947 TGGGGAACGACT 108958
| || || |||
Sbjct 212161 TCGGACACTACT 212172
>seq113
Length=909154
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 108474 CGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAG 108533
||| ||| || | |||||| ||||| |||||| |||||||| ||||||||||| |
Sbjct 360493 CGACCACCGGCTGCACCACCGCTACTCGGACACGGACGCCGACCCGCACAACGCCAAGCG 360434
Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCC 108582
|| |||| ||||||||||| || |||||||||| | ||| |||||
Sbjct 360433 AGGCTTCTTCTTCTCGCACGTCGGCTGGCTCATGACCAAGAAGCACCCC 360385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381764452776336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |