Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq997 226 1e-54 seq863 127 8e-25 seq960 113 2e-20 >seq997 Length=29618 Score = 226 bits (250), Expect = 1e-54 Identities = 397/580 (68%), Gaps = 26/580 (4%) Strand=Plus/Minus Query 30061 AAAGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 30120 ||||||||||| |||| ||| ||||||||||| | ||||| || || || ||||||||| Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305 Query 30121 CTGA-TGACTCGCCGCGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCAGG 30179 ||| | || ||||| |||| |||||| ||| |||| |||||| || ||||||| | Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246 Query 30180 GTAACCGTTATTATCTCCGCTCTGGTTATCTGCATTATCGCCTGCCTGTCATGGGCTGTT 30239 |||||| || |||| |||| | ||||||||| | | | || || | ||||| || Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186 Query 30240 AATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAAGCCAC------- 30292 || || || || || ||||||||| |||||||||||||||||||||||||||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 30293 --------------ATCCATCATCGCTGATATGCAGAAGCGGCAACGTGATGTAGCAGAA 30338 ||| |||| || ||||||| || || ||||||| || | Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 30339 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGCGACTATCGAAAGTCTCCGT 30398 || || |||| |||||| || | |||||||| || | | || || |||| | | Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006 Query 30399 GCTGATGTTTCTGCTGGGCGTAAGCGCCTGCAAGTCTCCGCCACCTGT---GCAAAGTCA 30455 ||||| |||||| |||||||| ||||| || ||| | |||| || || | Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGA 17946 Query 30456 ACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAGGACTTACAGCAGATGCTGAA 30515 ||||||| || || |||||||||||| |||| ||||||| | |||||| Sbjct 17945 GCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAA 17886 Query 30516 CTCAATTATTACCGTCTCCGAGGTGGAATCGACAAGATAACCGCGCAGGTTAACTACCTG 30575 | |||||| | ||| || |||||| || | || |||||| ||| ||| Sbjct 17885 CGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTG 17826 Query 30576 CAGGAGTACATCAGGACGCAATGCCTGAAATAAttttttt 30615 ||| | ||||| || || || ||| | |||||| ||||| Sbjct 17825 CAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786 >seq863 Length=44871 Score = 127 bits (140), Expect = 8e-25 Identities = 87/98 (89%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 24181 AGAGCCTGTAACTGTTTTCCGTCCATAAATTAACCTTCATTTGATGCTGGATTGAACATA 24240 ||||||| ||||||||| |||||||||| |||||| | ||||||| || |||||||||| Sbjct 30521 AGAGCCTACAACTGTTTTTCGTCCATAAAGTAACCTGCTTTTGATGTTGAATTGAACATA 30462 Query 24241 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTC 24278 ||||||||||||||||||||||| | ||||||||||| Sbjct 30461 TCAAAATCAGGCAATTACACAAACTTGTGTACAGGCTC 30424 >seq960 Length=33163 Score = 113 bits (124), Expect = 2e-20 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 52496 AGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGCAT 52555 ||| || ||||||| ||||| ||||| || |||| | || || ||||||||| | Sbjct 13030 AGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGT 13089 Query 52556 CTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACAT 52615 |||||||||| | | || |||| | | | |||||||||||||| | | ||| | Sbjct 13090 GTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCT 13149 Query 52616 GCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAGTG 52675 |||| |||| ||| || ||| | || | | || || || | ||||||||||| Sbjct 13150 GCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTG 13209 Query 52676 GGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCAC 52735 || |||||| ||| | ||||||||||||||| ||| | ||||| || ||||| Sbjct 13210 GGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCAC 13269 Query 52736 AGAGCCGCGGATGACCT 52752 |||||||| | |||| Sbjct 13270 CGAGCCGCGCTTTACCT 13286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198741254551672