Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq997 226 1e-54
seq863 127 8e-25
seq960 113 2e-20
>seq997
Length=29618
Score = 226 bits (250), Expect = 1e-54
Identities = 397/580 (68%), Gaps = 26/580 (4%)
Strand=Plus/Minus
Query 30061 AAAGGCGCATGTGATCAGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGG 30120
||||||||||| |||| ||| ||||||||||| | ||||| || || || |||||||||
Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305
Query 30121 CTGA-TGACTCGCCGCGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCAGG 30179
||| | || ||||| |||| |||||| ||| |||| |||||| || ||||||| |
Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246
Query 30180 GTAACCGTTATTATCTCCGCTCTGGTTATCTGCATTATCGCCTGCCTGTCATGGGCTGTT 30239
|||||| || |||| |||| | ||||||||| | | | || || | ||||| ||
Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186
Query 30240 AATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAAGCCAC------- 30292
|| || || || || ||||||||| ||||||||||||||||||||||||||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126
Query 30293 --------------ATCCATCATCGCTGATATGCAGAAGCGGCAACGTGATGTAGCAGAA 30338
||| |||| || ||||||| || || ||||||| || |
Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066
Query 30339 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAATGCGACTATCGAAAGTCTCCGT 30398
|| || |||| |||||| || | |||||||| || | | || || |||| | |
Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCAT 18006
Query 30399 GCTGATGTTTCTGCTGGGCGTAAGCGCCTGCAAGTCTCCGCCACCTGT---GCAAAGTCA 30455
||||| |||||| |||||||| ||||| || ||| | |||| || || |
Sbjct 18005 AGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGA 17946
Query 30456 ACGACCGGAGCCAGCAGCATGGGCGATGGAGAAAGCCCAGGACTTACAGCAGATGCTGAA 30515
||||||| || || |||||||||||| |||| ||||||| | ||||||
Sbjct 17945 GCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAA 17886
Query 30516 CTCAATTATTACCGTCTCCGAGGTGGAATCGACAAGATAACCGCGCAGGTTAACTACCTG 30575
| |||||| | ||| || |||||| || | || |||||| ||| |||
Sbjct 17885 CGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTG 17826
Query 30576 CAGGAGTACATCAGGACGCAATGCCTGAAATAAttttttt 30615
||| | ||||| || || || ||| | |||||| |||||
Sbjct 17825 CAGAACTACATAAGCACTCAGTGCTTAAAATAAAGTTTTT 17786
>seq863
Length=44871
Score = 127 bits (140), Expect = 8e-25
Identities = 87/98 (89%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 24181 AGAGCCTGTAACTGTTTTCCGTCCATAAATTAACCTTCATTTGATGCTGGATTGAACATA 24240
||||||| ||||||||| |||||||||| |||||| | ||||||| || ||||||||||
Sbjct 30521 AGAGCCTACAACTGTTTTTCGTCCATAAAGTAACCTGCTTTTGATGTTGAATTGAACATA 30462
Query 24241 TCAAAATCAGGCAATTACACAAATCTATGTACAGGCTC 24278
||||||||||||||||||||||| | |||||||||||
Sbjct 30461 TCAAAATCAGGCAATTACACAAACTTGTGTACAGGCTC 30424
>seq960
Length=33163
Score = 113 bits (124), Expect = 2e-20
Identities = 179/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 52496 AGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGCAT 52555
||| || ||||||| ||||| ||||| || |||| | || || ||||||||| |
Sbjct 13030 AGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGT 13089
Query 52556 CTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACAT 52615
|||||||||| | | || |||| | | | |||||||||||||| | | ||| |
Sbjct 13090 GTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCT 13149
Query 52616 GCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAGTG 52675
|||| |||| ||| || ||| | || | | || || || | |||||||||||
Sbjct 13150 GCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCAGGTGGACAAGTG 13209
Query 52676 GGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCAC 52735
|| |||||| ||| | ||||||||||||||| ||| | ||||| || |||||
Sbjct 13210 GGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGGCAAGGGCGGCAC 13269
Query 52736 AGAGCCGCGGATGACCT 52752
|||||||| | ||||
Sbjct 13270 CGAGCCGCGCTTTACCT 13286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 198741254551672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |