Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq197 122 6e-23 seq1030 87.8 1e-12 >seq197 Length=620651 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || ||||| | || |||||| | |||||||||||| || || || |||||||| || | | Sbjct 446478 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 446537 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | ||||||||| || || |||||| | |||| |||||| ||||| || Sbjct 446538 AAGG-TGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 446596 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| || || |||||| | || || || || | ||| || Sbjct 446597 AATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGAC 446656 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| ||||| || || ||||| ||||| || ||||| |||||| Sbjct 446657 TTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATA 446705 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || ||||| | || |||||| | |||||||||||| || || || |||||||| || | | Sbjct 448106 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 448165 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | ||||||||| || || |||||| | |||| |||||| ||||| || Sbjct 448166 AAGG-TGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 448224 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||||||||| || || |||||| | || || || || | ||| || Sbjct 448225 AATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGAC 448284 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| ||||| || ||||| |||||| Sbjct 448285 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATA 448333 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 ||||| | ||| |||||||| || || || |||||||| ||| || || || | | Sbjct 447665 AAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCG--GACAAGGTGCGACCAT 447722 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 | || | ||||| |||||| | || | ||||||||||||| || || || ||||||| Sbjct 447723 CCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGT 447782 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | || ||| || ||| | || || || || | ||| || || | ||| |||| Sbjct 447783 CTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGG 447842 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || |||||||||||||| || ||||| |||||| Sbjct 447843 TCTTTCCTGTCAGAGTTTTGACGAAAATCTGCATA 447877 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || || ||||| || || ||||| || || || || || || Sbjct 446706 CCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTC--TG 446763 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || ||||||||| |||||| || ||| | || | ||||| |||||| | Sbjct 446764 ACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAG 446823 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || ||| | || || || || | ||| | Sbjct 446824 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAA 446883 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || || || || || || ||||| || ||||| |||||| Sbjct 446884 CTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATA 446933 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || || |||||||| || ||||| || || || || || | Sbjct 448863 CCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCA--G 448920 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || ||||||||| |||||| || ||| | || | ||||| |||||| | Sbjct 448921 ACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAG 448980 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || ||| | || || || || | ||| | Sbjct 448981 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCA 449040 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || || || || || || ||||| || ||||| |||||| Sbjct 449041 CTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATA 449090 >seq1030 Length=27445 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || || ||||||||||| || || || |||||||| ||| || | | | Sbjct 2686 CTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCA 2745 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || | ||||| |||||| | |||| ||||| ||||| || || || |||||| Sbjct 2746 TCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTG 2805 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| ||| ||| |||| || || ||| | || || || | ||| ||| Sbjct 2806 TCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATG 2865 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || || || || || || |||||||| Sbjct 2866 GTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATT 2903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357384185847290