Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011802.1
Length=41941
Score E
Sequences producing significant alignments: (Bits) Value
seq986 810 0.0
seq997 196 1e-45
seq1102 95.1 3e-15
>seq986
Length=30461
Score = 810 bits (898), Expect = 0.0
Identities = 980/1331 (74%), Gaps = 2/1331 (0%)
Strand=Plus/Plus
Query 1469 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 1528
|||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| ||
Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803
Query 1529 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 1588
||||| || | ||| || || || | ||| || ||||| |||||||| | || |||||
Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863
Query 1589 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 1648
| ||||| |||||| | ||| ||| ||||| | | || | ||||||||||||
Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923
Query 1649 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 1708
|| || || |||| | |||||||| || | || || || ||||| ||||| || ||
Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983
Query 1709 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 1768
|| || |||||| || || ||||| || || ||||||||||| ||||| || || |||
Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043
Query 1769 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 1828
|| | | || || |||||||| || |||||||||| |||||||||||| || |||
Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103
Query 1829 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 1888
||||| || || || |||||||| || | ||| | |||||||| | |||||||| |||
Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163
Query 1889 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 1948
|| ||| ||||| ||| | || || || || |||||||| ||||| | || || |||
Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223
Query 1949 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCAACCTCCCATCAGTT 2008
||||| ||||||| |||||| |||||||| || | ||||| |||| | | ||||||
Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283
Query 2009 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 2068
|||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || |||
Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343
Query 2069 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCTCCG 2128
|| || || || || || || ||||| || || || ||||| || || | || || ||
Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403
Query 2129 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 2188
|| || ||||| || || ||||| | |||||| ||||| || ||||| || || || |||
Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463
Query 2189 AGCGGAATAACGAGCGGATCAGATGCGGCTATTTTGTTAATTATTGATTCAGTCGCATCT 2248
|| |||| || |||||||| | || | ||| || |||||||| |||||||||
Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523
Query 2249 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 2308
|| ||||| ||||| || || || ||||||| ||| | | |||| | | | ||||||
Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583
Query 2309 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 2368
|| || | ||| ||||| || || || | || ||||| ||||| || |||||||| |||
Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643
Query 2369 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 2428
|| |||||||| | |||||| || |||||||| | |||||||| |||||||| ||||
Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703
Query 2429 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 2487
| || || || |||||| ||| | ||||| ||| | |||||| ||| ||||||
Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762
Query 2488 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 2547
||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| |
Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822
Query 2548 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 2607
|| || || | | ||||||||||| | || || || | ||||| || || || ||
Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882
Query 2608 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 2667
| ||||| |||| ||||| ||||| || || || || | | || | | |||
Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942
Query 2668 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 2727
|| || || |||| ||||| |||||||| | |||||| || ||||||||| | ||||||
Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002
Query 2728 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGGAGTGTAGCACTACAAATT 2787
||||| |||||||| ||||||| | ||||||||||||||| ||||||||| ||| ||
Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062
Query 2788 GCTTTGATCGA 2798
||||||||
Sbjct 13063 CACTTGATCGA 13073
>seq997
Length=29618
Score = 196 bits (216), Expect = 1e-45
Identities = 249/340 (73%), Gaps = 2/340 (1%)
Strand=Plus/Minus
Query 21974 AAAGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGC 22033
||||| ||||| |||| ||| || |||||||| | ||||| || || || ||||||||
Sbjct 18364 AAAGGCGCATGCGATCTGCTGCGGCGCTGGACTCATGCTGGAGGCAAACAGTGGAAAGGG 18305
Query 22034 CTGA-TGACTCGTCGTGAGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGA 22092
||| | || || || ||| |||||| || |||| |||||| | ||||||| ||
Sbjct 18304 -TGAGTAACGCGCCGGGAGAATGAGCGCGAATTCTGCATGTGGGACCATAAATGAGCTGA 18246
Query 22093 TTAACCTCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTT 22152
|||||| |||| |||| |||| | ||||||||| | | |||| || | ||||| ||
Sbjct 18245 TTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATT 18186
Query 22153 AATCATTATCGTGATAACGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAG 22212
|| || ||||| || ||||||||||||||||||| |||||||| | | ||| | ||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126
Query 22213 CTGGCGCTGGCGAACGCGACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAA 22272
|| | ||| ||||| || || | || ||||| || ||||||||||||| || |
Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066
Query 22273 CTTGACGCCAGATACACAAAGGAGCTTGCTGATGCGAAAG 22312
|| || |||| |||||| || | |||||||||||||
Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026
>seq1102
Length=22075
Score = 95.1 bits (104), Expect = 3e-15
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 3086
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215
Query 3087 TTACGTA 3093
||| |||
Sbjct 2214 TTATGTA 2208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 134086743388684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |