Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_011976.1
Length=43016
Score E
Sequences producing significant alignments: (Bits) Value
seq986 670 0.0
seq997 149 2e-31
seq952 98.7 3e-16
seq813 87.8 5e-13
>seq986
Length=30461
Score = 670 bits (742), Expect = 0.0
Identities = 710/933 (76%), Gaps = 2/933 (0%)
Strand=Plus/Plus
Query 20163 TTTCTGTATAAATTCTTCCGATGTACTCACCAAGGACACCAATGCCTATTAACTGTACTC 20222
|||| ||||||| ||||| |||||||| || || ||||||||||| || | || || |
Sbjct 11778 TTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGCACAC 11837
Query 20223 CTCCAAGGAAAAGTATTGAAACTAACAATGATGGATATCCTGGAACACTATTTCCGAATA 20282
| ||||||||||| || || || | ||||| ||||| || | ||| ||| || ||
Sbjct 11838 CACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAG 11897
Query 20283 GAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAAGGACGCG-CTGGCAACAGCAAGA 20341
|| |||||| |||||||||||| ||||| | || | || | | |||||| ||||
Sbjct 11898 CCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATG-CGAGACCTGCAACAACAAGC 11956
Query 20342 CCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAAACTTGTTATACCTTCAAGTGCC 20401
||||| ||||||||||| |||| ||||| || |||||||| || ||||| ||||| ||
Sbjct 11957 CCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCA 12016
Query 20402 AGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTGCCGGCAACACGCTCAGCCCTTGAA 20461
|||||||||| ||||| ||||||||||||| |||| ||||| || ||||| | | |
Sbjct 12017 AGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCA 12076
Query 20462 TACTCAACAACATCAATTTTTCCACCTACCCATGACAAAACGCCTTTCATGAATAGATTG 20521
|| ||||||||||| | ||||| ||||| || ||| || |||||||| || ||
Sbjct 12077 TATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTT 12136
Query 20522 CGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCTCGCGACATCAAGCGGAAATCACCA 20581
| ||| || | || || |||||||| || || || || ||||||| |||||||||||
Sbjct 12137 CTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCACCG 12196
Query 20582 ACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTGTGTAGCTTATAGAACCACTCAGCC 20641
|| ||||| ||||| | ||||| || ||||||||||| | ||||||||||||||| ||
Sbjct 12197 ACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCA 12256
Query 20642 GATTTGCGCTTTAGCCTTCCATCGGTAGAGCGGTCTGCTCTTTTAGCCAGAACCATATCA 20701
||||| || || || | | ||| || |||||||| | | || ||||| ||||| ||
Sbjct 12257 GATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCG 12316
Query 20702 GCGCCATCTAGCCACCTATCAATGAGTTTAGGAATAACATCGATAGGGTCTTGCAGATCA 20761
|| || | |||| | || || || | ||||| || || || ||||| |||| ||
Sbjct 12317 GCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCT 12376
Query 20762 ACGTCGATTGGGATAACAGCTTCACCAGTAGCATTATCAAGACCTGCGAATAGGGCTGGC 20821
||||| || ||||||| |||||||| ||||| | || || || ||||||| || |||
Sbjct 12377 ACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGC 12436
Query 20822 TCTTTGCCAAAGTTTCTAGTGAACGATAGTGGTACCACTAATTTATCAGATACAGCAAGC 20881
||||| |||||||| | ||||| || || || ||||| | ||| | | |||||||
Sbjct 12437 TCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGC 12496
Query 20882 GCATTGATGATTGATTCTGTCGAATCGCTGCTTCCGTCATTGATGAAGACTATCTCAACT 20941
|| || || |||||||| |||| ||| |||| |||||||||||||||||||||||||||
Sbjct 12497 GCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCAACT 12556
Query 20942 TCATGCTCCTTTAGGCCTTCAAACTCGCGTACCGTTTTATAAAAAATAGGTATCGTGGCC 21001
|| |||| ||||| ||||||||||| || || | ||| || || || || || | ||
Sbjct 12557 TCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCC 12616
Query 21002 TCTTCGTTAAAGACCGGAACGACTAAAGAAATTTTCATTTCGTATCCCTAAAGACAATGA 21061
||||| ||||| ||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 12617 TCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGA 12676
Query 21062 ATTTTGAATAGATAAACCCTGCTACCAGGCTGA 21094
| ||||||||||| || || ||||| ||||
Sbjct 12677 ACTTTGAATAGATGAAGCCGCACACCAGACTGA 12709
>seq997
Length=29618
Score = 149 bits (164), Expect = 2e-31
Identities = 302/453 (67%), Gaps = 24/453 (5%)
Strand=Plus/Minus
Query 40459 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 40518
|||||| || |||||||||| |||| |||| | ||||||||| | | |||| || |
Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195
Query 40519 TGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGAGCAGCGCGATAAAGCC 40578
||||| |||| || || || || ||||||| | ||||||||||||||||||||||||||
Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135
Query 40579 AC---------------------ATCCATCATCGCTGATATGCAGAAGCGTCAACGTGAT 40617
|| ||| |||| || ||||||| || || ||||||
Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075
Query 40618 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 40677
| || | || || |||| |||||| || | |||||||| || | | || ||
Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015
Query 40678 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT--- 40734
|||| | | ||||| |||||| |||||||| ||||| || ||| | ||||
Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955
Query 40735 GCAAAGTCAACGACCGGAGCCAGCGGCATGGGCAATGGAGAAAGCCCAAGACTTACAGCA 40794
|| || | ||||||| || ||||||||||| ||| |||| |||||||| |
Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895
Query 40795 GATGCTGAACTCAATTATTACCGTCTACGAAGTGGAATCGACAGGATAACCGCGCAGGTT 40854
||||||| |||||| | || ||| |||||| || | || ||||||
Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835
Query 40855 AACTACCTGCAGGAATACATCAGGACGCAATGC 40887
||| |||||| | ||||| || || || |||
Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGC 17802
>seq952
Length=33737
Score = 98.7 bits (108), Expect = 3e-16
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 21601 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCACCATTATATATCAACTGG 21660
|||||||||||| ||||| ||||||||||||| ||||||| ||||| || ||| |
Sbjct 12111 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTCATTTCATAGAG 12052
Query 21661 TTACGCCTCTTTAATTCCCTCCTTATTTTCCATATGGGACATATTTGTGACATC 21714
||||||||| | | |||||| |||| | | ||||||||||||| ||||||
Sbjct 12051 TTACGCCTCACTCACATCCTCCTGATTTCCGTTGTGGGACATATTTGGGACATC 11998
>seq813
Length=55966
Score = 87.8 bits (96), Expect = 5e-13
Identities = 171/248 (69%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 27661 CCCTCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTC 27720
|| |||| ||| |||||| |||||| || ||||| || | ||||| || |||||
Sbjct 13539 CCTTCGATATAGACCTGAGAACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTG 13598
Query 27721 CCAACTACGGCAACACGA--TGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTAT 27778
|||| || ||| |||| ||||||||||||||||| || || || ||| |||||
Sbjct 13599 CCAA--ACAGCACCACGCGGTGCCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTAT 13656
Query 27779 CTCGCCACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGCCGTC-CCTGATGGTGAA 27837
| ||||| || || ||||| | || | ||| || ||| || | || ||
Sbjct 13657 CACGCCAGGATTCGGAAGTAGCCAGCGTAATGTTGGC-AACTGCGCCACCACTCGGCATG 13715
Query 27838 TAACGAACCTCCGGGTCTTGCCCGACCCGGCCTAAGATGATCACCTTATTTACGCCTCTA 27897
|| || || |||||||| || || | || | || |||||||| |||||||||||
Sbjct 13716 TAGCGTACTTCCGGGTCCTGGCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTG 13775
Query 27898 CTAGCCAT 27905
|| |||||
Sbjct 13776 CTGGCCAT 13783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137526670103784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |