Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq986 670 0.0 seq997 149 2e-31 seq952 98.7 3e-16 seq813 87.8 5e-13 >seq986 Length=30461 Score = 670 bits (742), Expect = 0.0 Identities = 710/933 (76%), Gaps = 2/933 (0%) Strand=Plus/Plus Query 20163 TTTCTGTATAAATTCTTCCGATGTACTCACCAAGGACACCAATGCCTATTAACTGTACTC 20222 |||| ||||||| ||||| |||||||| || || ||||||||||| || | || || | Sbjct 11778 TTTCGATATAAATCCTTCCAATGTACTCTCCGAGCACACCAATGCCGATAAGTTGCACAC 11837 Query 20223 CTCCAAGGAAAAGTATTGAAACTAACAATGATGGATATCCTGGAACACTATTTCCGAATA 20282 | ||||||||||| || || || | ||||| ||||| || | ||| ||| || || Sbjct 11838 CACCAAGGAAAAGGATGGAGACAAGTAATGACGGATAGCCACGCACAGCATTGCCAAAAG 11897 Query 20283 GAAGCTTGTCTAAAATCATCCATGCTCCATAAATGAAGGACGCG-CTGGCAACAGCAAGA 20341 || |||||| |||||||||||| ||||| | || | || | | |||||| |||| Sbjct 11898 CCAGAGTGTCTACAATCATCCATGCGCCATAGAGAAATG-CGAGACCTGCAACAACAAGC 11956 Query 20342 CCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGAAACTTGTTATACCTTCAAGTGCC 20401 ||||| ||||||||||| |||| ||||| || |||||||| || ||||| ||||| || Sbjct 11957 CCGATATAGGTCCACATGCGCAGAGGGAAGGTAGAGAAACTGGTGATACCCTCAAGAGCA 12016 Query 20402 AGGTTCCATAGTTTCCAGCCATTAAATTTTGAGTTGCCGGCAACACGCTCAGCCCTTGAA 20461 |||||||||| ||||| ||||||||||||| |||| ||||| || ||||| | | | Sbjct 12017 AGGTTCCATAACTTCCAACCATTAAATTTTGTACTGCCTGCAACGCGTTCAGCGCGGGCA 12076 Query 20462 TACTCAACAACATCAATTTTTCCACCTACCCATGACAAAACGCCTTTCATGAATAGATTG 20521 || ||||||||||| | ||||| ||||| || ||| || |||||||| || || Sbjct 12077 TATTCAACAACATCCGTGCGACCACCAACCCAGCTCAGAACTCCCTTCATGAAGAGGTTT 12136 Query 20522 CGCTCAGGAAGTAGTTTTATGTTTTCAACAACTTCTCGCGACATCAAGCGGAAATCACCA 20581 | ||| || | || || |||||||| || || || || ||||||| ||||||||||| Sbjct 12137 CTCTCTGGCATGAGCTTGATGTTTTCGACCACCTCACGGGACATCAGACGGAAATCACCG 12196 Query 20582 ACGTTTTCTTCGATTTTAGGGTTGCTAATTTTGTTGTGTAGCTTATAGAACCACTCAGCC 20641 || ||||| ||||| | ||||| || ||||||||||| | ||||||||||||||| || Sbjct 12197 ACATTTTCCTCGATCTGCGGGTTACTGATTTTGTTGTGCAACTTATAGAACCACTCGGCA 12256 Query 20642 GATTTGCGCTTTAGCCTTCCATCGGTAGAGCGGTCTGCTCTTTTAGCCAGAACCATATCA 20701 ||||| || || || | | ||| || |||||||| | | || ||||| ||||| || Sbjct 12257 GATTTACGTTTCAGACGACTATCAGTGGAGCGGTCAGAGCGCTTGGCCAGTACCATGTCG 12316 Query 20702 GCGCCATCTAGCCACCTATCAATGAGTTTAGGAATAACATCGATAGGGTCTTGCAGATCA 20761 || || | |||| | || || || | ||||| || || || ||||| |||| || Sbjct 12317 GCCCCGGCCTGCCATTTCTCTATCAGATGCGGAATGACCTCAATTGGGTCCTGCAAGTCT 12376 Query 20762 ACGTCGATTGGGATAACAGCTTCACCAGTAGCATTATCAAGACCTGCGAATAGGGCTGGC 20821 ||||| || ||||||| |||||||| ||||| | || || || ||||||| || ||| Sbjct 12377 ACGTCAATCGGGATAATTGCTTCACCTGTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGC 12436 Query 20822 TCTTTGCCAAAGTTTCTAGTGAACGATAGTGGTACCACTAATTTATCAGATACAGCAAGC 20881 ||||| |||||||| | ||||| || || || ||||| | ||| | | ||||||| Sbjct 12437 TCTTTTCCAAAGTTGCGGGTGAAGGAAAGAGGAACCACAAGCGGATCTGCAATAGCAAGC 12496 Query 20882 GCATTGATGATTGATTCTGTCGAATCGCTGCTTCCGTCATTGATGAAGACTATCTCAACT 20941 || || || |||||||| |||| ||| |||| ||||||||||||||||||||||||||| Sbjct 12497 GCGTTTATAATTGATTCGGTCGCATCTTTGCTACCGTCATTGATGAAGACTATCTCAACT 12556 Query 20942 TCATGCTCCTTTAGGCCTTCAAACTCGCGTACCGTTTTATAAAAAATAGGTATCGTGGCC 21001 || |||| ||||| ||||||||||| || || | ||| || || || || || | || Sbjct 12557 TCCTGCTGCTTTAACCCTTCAAACTCCCGCACGGCTTTGTAGAAGATTGGAATTGCTTCC 12616 Query 21002 TCTTCGTTAAAGACCGGAACGACTAAAGAAATTTTCATTTCGTATCCCTAAAGACAATGA 21061 ||||| ||||| ||||||||||| | |||||||||||||||| ||||||||||||||||| Sbjct 12617 TCTTCATTAAACACCGGAACGACCAGAGAAATTTTCATTTCGCATCCCTAAAGACAATGA 12676 Query 21062 ATTTTGAATAGATAAACCCTGCTACCAGGCTGA 21094 | ||||||||||| || || ||||| |||| Sbjct 12677 ACTTTGAATAGATGAAGCCGCACACCAGACTGA 12709 >seq997 Length=29618 Score = 149 bits (164), Expect = 2e-31 Identities = 302/453 (67%), Gaps = 24/453 (5%) Strand=Plus/Minus Query 40459 ATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 40518 |||||| || |||||||||| |||| |||| | ||||||||| | | |||| || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 40519 TGGGCTGTTAATCATTACCGTGATAACGCCACCGCCTACAAAGAGCAGCGCGATAAAGCC 40578 ||||| |||| || || || || ||||||| | |||||||||||||||||||||||||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCC 18135 Query 40579 AC---------------------ATCCATCATCGCTGATATGCAGAAGCGTCAACGTGAT 40617 || ||| |||| || ||||||| || || |||||| Sbjct 18134 ACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGAT 18075 Query 40618 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAA 40677 | || | || || |||| |||||| || | |||||||| || | | || || Sbjct 18074 GCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAG 18015 Query 40678 AGTCTCCGTGCTGATGTTTCTGCTGGTCGTAAGCGCCTGCAAGTCGCCGCCACCTGT--- 40734 |||| | | ||||| |||||| |||||||| ||||| || ||| | |||| Sbjct 18014 CGTCTGCATAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCC 17955 Query 40735 GCAAAGTCAACGACCGGAGCCAGCGGCATGGGCAATGGAGAAAGCCCAAGACTTACAGCA 40794 || || | ||||||| || ||||||||||| ||| |||| |||||||| | Sbjct 17954 GCGAACGGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGAC 17895 Query 40795 GATGCTGAACTCAATTATTACCGTCTACGAAGTGGAATCGACAGGATAACCGCGCAGGTT 40854 ||||||| |||||| | || ||| |||||| || | || |||||| Sbjct 17894 TCCGCTGAACGGGATTATTTCATCCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTC 17835 Query 40855 AACTACCTGCAGGAATACATCAGGACGCAATGC 40887 ||| |||||| | ||||| || || || ||| Sbjct 17834 GGCTATCTGCAGAACTACATAAGCACTCAGTGC 17802 >seq952 Length=33737 Score = 98.7 bits (108), Expect = 3e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 21601 CTTCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCACCATTATATATCAACTGG 21660 |||||||||||| ||||| ||||||||||||| ||||||| ||||| || ||| | Sbjct 12111 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTCATTTCATAGAG 12052 Query 21661 TTACGCCTCTTTAATTCCCTCCTTATTTTCCATATGGGACATATTTGTGACATC 21714 ||||||||| | | |||||| |||| | | ||||||||||||| |||||| Sbjct 12051 TTACGCCTCACTCACATCCTCCTGATTTCCGTTGTGGGACATATTTGGGACATC 11998 >seq813 Length=55966 Score = 87.8 bits (96), Expect = 5e-13 Identities = 171/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 27661 CCCTCGAAATAAACCTGATCACCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTC 27720 || |||| ||| |||||| |||||| || ||||| || | ||||| || ||||| Sbjct 13539 CCTTCGATATAGACCTGAGAACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTG 13598 Query 27721 CCAACTACGGCAACACGA--TGCCATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTAT 27778 |||| || ||| |||| ||||||||||||||||| || || || ||| ||||| Sbjct 13599 CCAA--ACAGCACCACGCGGTGCCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTAT 13656 Query 27779 CTCGCCACTGCTCTGATGTAGCGACTGTCAGGTTAGCGAACGCCGTC-CCTGATGGTGAA 27837 | ||||| || || ||||| | || | ||| || ||| || | || || Sbjct 13657 CACGCCAGGATTCGGAAGTAGCCAGCGTAATGTTGGC-AACTGCGCCACCACTCGGCATG 13715 Query 27838 TAACGAACCTCCGGGTCTTGCCCGACCCGGCCTAAGATGATCACCTTATTTACGCCTCTA 27897 || || || |||||||| || || | || | || |||||||| ||||||||||| Sbjct 13716 TAGCGTACTTCCGGGTCCTGGCCCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTG 13775 Query 27898 CTAGCCAT 27905 || ||||| Sbjct 13776 CTGGCCAT 13783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137526670103784