Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq486 345 4e-90 seq1030 107 2e-18 seq197 100 3e-16 >seq486 Length=217039 Score = 345 bits (382), Expect = 4e-90 Identities = 897/1364 (66%), Gaps = 10/1364 (1%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||||| ||||| || | || ||| | ||||| ||||||||| ||| | | Sbjct 176515 CAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATCGACGCCGCCATC 176456 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || ||| | || | || | || | ||||||||||| || ||||| ||||| | Sbjct 176455 ACCACCTACAACCTGCTCTCCGAGAAGTACTTCACGCACGCCAGCCCCACCCTGTTCTCG 176396 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 |||| ||| |||||| | || || ||||| | || || || || |||||| Sbjct 176395 GCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGGACGACAGC 176336 Query 123096 ATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGC 123155 ||| |||||||| || ||| || | || || || || ||||||| | |||||| Sbjct 176335 ATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCGCGGGCGGC 176276 Query 123156 ATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGA 123215 ||||| || | || || | | |||| || | | |||| |||| |||| Sbjct 176275 ATAGGAGTTCATGTTCATTGCATCAGAGCGAAAGGCACCTACATCGCGGGCACGAACGGC 176216 Query 123216 ATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGAC 123275 || || |||||| | |||||||||| || ||||| ||| | | ||| |||| ||| Sbjct 176215 GTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCGCTACGTGGAC 176156 Query 123276 CAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGAT 123332 ||||||||||| || ||||| | || |||| || || |||||||||| ||| Sbjct 176155 CAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTGGCACGCTGAC 176096 Query 123333 GTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGAT 123392 | | ||| || || | || || |||| ||| || ||| | || || || Sbjct 176095 ATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAAAGAGGAAGTGCGCGCGCGAGAG 176036 Query 123393 TTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTG 123452 |||| || ||| | ||| | | ||| | || ||| | || | || ||| | | Sbjct 176035 CTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTGAGAACAACGAGGAG 175976 Query 123453 TGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTT 123512 ||| || ||||| || | | || |||||| || || || || | ||| Sbjct 175975 TGGAGCCTTATGTGCCCTCACGACAGCCCTGGCTTGGCTGATTGTTGGGGAGATGAATTT 175916 Query 123513 GACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGT 123572 || | || || | |||| || | ||||| | |||| | || | || | Sbjct 175915 GATGCATTATATCAGAAATATGAACAAGAAGGTAGGTTTGTTAAAAAAGTCCGCGCTCAA 175856 Query 123573 GATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTAC 123632 | | || |||||| || ||||||| || || ||||| || |||||||| ||| Sbjct 175855 ATCCTATGGAAGGCTATTATTGAGGCACAAGTAGAGACTGGAACTCCATACATGCTTTAC 175796 Query 123633 AAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAAT 123692 ||||| || |||||||| || | |||||| | || |||||||| || ||||| || ||| Sbjct 175795 AAAGATGCATGCAACAGAAAGAGCAATCAAAAGAATTTGGGAACCATCAAATGCAGCAAT 175736 Query 123693 CTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCT 123752 || ||| | || ||| | || |||| ||| ||| |||| || || || || ||||| Sbjct 175735 CTATGCACGGAGATTGTTGAGTACACATCTGCTGATGAAGTAGCTGTTTGCAACTTGGCG 175676 Query 123753 TCGATTTGCGTGAATCGTTGCGT---CGAAAACGGCGCTTTTAATTTCCAAACGCTCAAA 123809 || ||| || || | || |||||| | | | |||| | | || ||| Sbjct 175675 TCAATTGCTGTCAACATGTTTGTAACCGAAAATAAAACATATGATTTTGAGAAACTAAAA 175616 Query 123810 CGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCT 123869 | | || |||| || |||| ||||||| |||||||||||||||| ||||| Sbjct 175615 CAAGTGACCAAAATCATAACTGAGAACCTGAACAAGATTATCGATGTTAATTACTATCCC 175556 Query 123870 TTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGG 123929 | |||||| |||||| ||| ||| |||| |||| | ||| | ||||| Sbjct 175555 GTCCCAGAAGCGAAAAAGTCTAACATGAGGCACCGACCTATCGGCATTGGCGTCCAAGGT 175496 Query 123930 TTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT 123989 ||||||| || |||||| || ||||| | || ||||| || || | ||| || ||| Sbjct 175495 CTGGCCGATGCTTTTGTATTGATGCGCCTTCCTTACGAGAGTGAAGGAGCCCAGAAGCTC 175436 Query 123990 AATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCG 124049 ||| |||||| ||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 175435 AATCAACAAATATTTGAAACCATCTATTATGGGGCTTTAGAAGCTAGCTGTGAACTGGCC 175376 Query 124050 AAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAG 124109 ||| | ||||| || |||| || || || | ||||| || ||| || ||||| Sbjct 175375 GAAAAACTCGGCGTTTATGAAACGTATGCTGGTTGTCCGGCCAGTGAAGGAATATTGCAA 175316 Query 124110 TACGACATGTGG--AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAAC 124167 || || |||||| || | ||||| ||| | ||||||||||||| | | | || || Sbjct 175315 TATGAAATGTGGGGAAAG--ACACCCACAGACCTGTGGGACTGGAGTGCTCTGAAGCAGA 175258 Query 124168 GCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCA 124227 || ||| || || |||| ||||| |||||| |||| |||||| || || ||| Sbjct 175257 AGATCGCGAAACATGGCCTGCGGAACTCTCTGTTGCTGGCCCCCATGCCCACCGCCTCCA 175198 Query 124228 CTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACT 124271 |||| || ||| | || ||||| ||||| || ||||| |||||| Sbjct 175197 CTGCACAGATTCTTGGCAACAATGAATCATTTGAGCCATTCACT 175154 >seq1030 Length=27445 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||||||||||| | || || || |||||||| ||||| || || ||| Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| ||||| || ||| | |||| ||| ||||||||||| || Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || || || ||||| ||| | ||||||||||| ||| || Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACC 2853 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || || || || || || || ||||| Sbjct 2854 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCAT 2900 >seq197 Length=620651 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | || || ||||| || || || ||||| ||||| || || || Sbjct 446475 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 446534 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||| || ||||||||||| Sbjct 446535 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 446594 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || || || | || | |||||| |||| ||| Sbjct 446595 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 446654 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || || ||||| || ||||| ||||| Sbjct 446655 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | || || ||||| || || || ||||| ||||| || || || Sbjct 448103 ATTCCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCA 448162 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||| || ||||||||||| Sbjct 448163 GATAAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGA 448222 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || || || | || | |||||| |||| ||| Sbjct 448223 GGAATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCG 448282 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || || ||||| || ||||| ||||| Sbjct 448283 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || || || || || ||||||||||| | Sbjct 446703 ATACCACCACGCAGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGT-- 446760 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| | | | || || | |||||| || ||| | || | ||| |||||||| | Sbjct 446761 CTGACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGG 446820 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || ||||| || || || | || | |||||| |||| | Sbjct 446821 GAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTT 446880 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| | || ||||| ||||| ||||| || ||||| ||||| Sbjct 446881 CAACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | || || ||||| || || ||||||||||| | Sbjct 448860 ATACCACCACGCAGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGT-- 448917 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | ||| | | | || || | |||||| || ||| | || | ||| |||||||| | Sbjct 448918 CAGACAATGTACGGCCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGG 448977 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || |||||||| || ||||| || || || | || | |||||| |||| | Sbjct 448978 GAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTT 449037 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| | || ||||| ||||| ||||| || ||||| ||||| Sbjct 449038 CCACTTCCAGAGTGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 45098 AACGTTTTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTG 45157 |||||| |||| | || || ||||| | || || | || || || || |||||||| Sbjct 446234 AACGTTGTATTAATTGCCACCACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTG 446293 Query 45158 GATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCG 45217 ||| || || ||| | ||| | ||| |||| ||||| || ||| | || | || Sbjct 446294 GATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACG 446353 Query 45218 TTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGT 45277 |||||||| || ||||| || || || || || || || || | || | ||| Sbjct 446354 CTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGT 446413 Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 ||| |||| || ||||| ||||| | || || || || ||||| || || ||||| || Sbjct 446414 GTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTG 446473 Query 45338 CAT 45340 ||| Sbjct 446474 CAT 446476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993063828240