Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_013055.1
Length=39896
Score E
Sequences producing significant alignments: (Bits) Value
seq960 152 1e-32
seq813 138 3e-28
>seq960
Length=33163
Score = 152 bits (168), Expect = 1e-32
Identities = 583/913 (64%), Gaps = 12/913 (1%)
Strand=Plus/Plus
Query 29434 TATGCGATCGATCTGTCGGTCGACGGAGGCTCGTACGCACAGGTGCTGTCGTCGGCCTTC 29493
|| || ||||| ||||| |||||| || ||| || | |||||| ||||||||||
Sbjct 12719 TACGCCATCGAGCTGTCCACCGACGGCGGGGCGTTCGTCGAAGTGCTGCAGTCGGCCTTC 12778
Query 29494 GATGGCAAGACGACGTCGCTTTACGAGCGCTCGCACCGGATCGAGTTGCC-GCGCGCCAC 29552
||||||| | ||||||||||| |||||| |||| |||| ||| ||||
Sbjct 12779 AGCGGCAAGAGCTCCAGCAAGTACGAGCGCTCCCACCGGGTCGACCTGCCAGCG-GCCAA 12837
Query 29553 AACCGGCTGGTTGGCCCGCGTGCGCCGCATCACGCCTAACGCACACAGCTCACTGATTGC 29612
|||||||| | || ||||| || | ||| | ||| | |||| ||| ||
Sbjct 12838 GGCCGGCTGGACCGTGCGGGTGCGGCGGCTGACGGCGAACTCCAGCAGCGGGGCGATCGC 12897
Query 29613 GGACACGGTGAATATCGAAGCGATCACGGAGGTGATTGACCGCAAGCTGCGGTATCCGAT 29672
|| || | | || | ||||| || ||||| ||| |||| |||| || |||
Sbjct 12898 CGATACCACCAGCGTGGAGTCCATCACCGACGTGATCGACGCCAAGTTGCGCTACCCGGG 12957
Query 29673 GACAGCGCTCGTCGGCATGACGTTTGACGCGCGATCGTTCTCGCAGGTGCCGGTGCGGTC 29732
| ||| || ||||| || ||| || || |||| | | | || || ||
Sbjct 12958 TTCGGCGATCATCGGCCTGCAGTTCGATGCCTCGCAGTTCCAGTCGATTCCCAACCGCTC 13017
Query 29733 GTACCACGTTCGCGGCCTGATCATTCGGGTGCCGTCGAACTACGATCCCGAGACGCGCAC 29792
| | | | | || | |||||| || ||||| ||||||||||| | || || ||
Sbjct 13018 CTTCGAATTGCAAGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGAC 13077
Query 29793 GTACTCGGGGGCATGGGACGGGACGTTCAAGCCGGCGTNNNNNNNNNNNNNNNNNNNNNT 29852
||| || | |||||||| || |||||| |||| | |
Sbjct 13078 CTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGAT 13137
Query 29853 TTTCTACGACCTGCTGCTGAACGATCGCTACGGCCTCGGCAAGACGGTCGACGCGTCGAT 29912
| |||||||||||||||| || | || || |||||||| | | || |||| |
Sbjct 13138 CTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCA 13197
Query 29913 GATCGACAAGTGGGGGCTGTACGAAATTGCGCGGTATTGCGACGTCATGGTGTCGGACGG 29972
| | |||||||||| ||||||| || | | ||| |||||| |||||| || ||
Sbjct 13198 GGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGG 13257
Query 29973 CAGAGGCGGCGTTGAACCGCGCTTCACGTGCAACTGCGTGATCCAGTCGGCCGCCGACGC 30032
|| |||||| || |||||||| || |||||| | || | | |||||| ||
Sbjct 13258 CAAGGGCGGCACCGAGCCGCGCTTTACCTGCAACCTCTATCTCTCGGTGCGCGCCGATGC 13317
Query 30033 GTACAAGGTGCTGCAAGATATTGCCAGCGTGTTCCGCGGCATTTCGTACTGGGGGCCGGG 30092
| || |||||||| || | |||| | ||||||||||| | || ||||| | ||
Sbjct 13318 GCTGAAAGTGCTGCAGGACCTGGCCACCACCTTCCGCGGCATGGCCTATTGGGGCGCAGG 13377
Query 30093 TGCGGTAGTCGCTTCCGCGGACATGCCTTCCGATCCGGTCTACGTTTACACCGCGGCGAA 30152
|||| | || || |||||||| || ||||| ||| |||| | || ||
Sbjct 13378 CTCGGTGATGGCGGTGGCCGACATGCCGGAAGACCCGGTGTACACCTACAGCAACGCCAA 13437
Query 30153 CGTGATCGACGGGGCATTTCG-CTACGTAGGGAGCGAGCGCAAGACGCGATACACGGTCG 30211
|||||||||| || | |||| ||||| || | | ||||| || |||| || |
Sbjct 13438 CGTGATCGAC-GGCAAGTTCGTCTACGGTGGCTCGGCGAAAAAGACCCGCTACAGCGTGG 13496
Query 30212 CGCTTGTCAGCTACAACGATCCATCGAACCAGTACAAACAGGCGGTCGAGTACGTGCCGG 30271
| || || |||| ||||| || || || ||| ||| ||| ||||||| |
Sbjct 13497 CCCTGGTGAGCTGGAACGACCCGGCGGACTTCTACCGGCAGAAGGTGCAGTACGT---CG 13553
Query 30272 ACGA---CGACGGTATTGCGCGTTACGGCGT-CATCAAGACGCAGGTAACGGCGTTCGGT 30327
|||| || || || || ||||| ||||| || | |||| || | || || |||
Sbjct 13554 ACGATCCGGAAGGCATCGCCCGTTATGGCGTGCAGC-AGACCGAGATCACCGCCACCGGC 13612
Query 30328 TGCACGTCGCAGG 30340
||||| || ||||
Sbjct 13613 TGCACCTCCCAGG 13625
>seq813
Length=55966
Score = 138 bits (152), Expect = 3e-28
Identities = 198/277 (71%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901
||| |||||||||| || ||| | ||||| | || || || || |||| ||| |
Sbjct 23030 GAGATCGCCGAAATTTCCCGCTCGCTCAAGGCGTTAGCCAAAGAGCTGCACGTGCCGGTG 22971
Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961
| ||||||||||||||||| || || || | || | |||| || || ||||
Sbjct 22970 GTGGCGCTGTCGCAGCTTAACCGCTCTCTGGAACAACGTGCCGACAAACGTCCGGTCAAC 22911
Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021
||||| ||||| || || || |||||||||||||||||||| | ||| | |||||||||
Sbjct 22910 TCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGATGCCGACTTAATCATGTTTATCTAC 22851
Query 9022 CGCGATGAGGTCTATAACCCCGACAGCG--CAGATCGCGGTACGGCCGAAATCATCATTG 9079
|| |||||||| ||| || |||||| | || || | |||||||| || ||||
Sbjct 22850 CGTGATGAGGTTTATCACGAGAACAGCGACCTGA--AAGGGATCGCCGAAATTATTATTG 22793
Query 9080 CGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116
|| || || ||||| ||||| || || || || ||
Sbjct 22792 GTAAACAACGTAACGGCCCGATCGGGACGGTGCGTCT 22756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127542882800424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |