Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq960 152 1e-32 seq813 138 3e-28 >seq960 Length=33163 Score = 152 bits (168), Expect = 1e-32 Identities = 583/913 (64%), Gaps = 12/913 (1%) Strand=Plus/Plus Query 29434 TATGCGATCGATCTGTCGGTCGACGGAGGCTCGTACGCACAGGTGCTGTCGTCGGCCTTC 29493 || || ||||| ||||| |||||| || ||| || | |||||| |||||||||| Sbjct 12719 TACGCCATCGAGCTGTCCACCGACGGCGGGGCGTTCGTCGAAGTGCTGCAGTCGGCCTTC 12778 Query 29494 GATGGCAAGACGACGTCGCTTTACGAGCGCTCGCACCGGATCGAGTTGCC-GCGCGCCAC 29552 ||||||| | ||||||||||| |||||| |||| |||| ||| |||| Sbjct 12779 AGCGGCAAGAGCTCCAGCAAGTACGAGCGCTCCCACCGGGTCGACCTGCCAGCG-GCCAA 12837 Query 29553 AACCGGCTGGTTGGCCCGCGTGCGCCGCATCACGCCTAACGCACACAGCTCACTGATTGC 29612 |||||||| | || ||||| || | ||| | ||| | |||| ||| || Sbjct 12838 GGCCGGCTGGACCGTGCGGGTGCGGCGGCTGACGGCGAACTCCAGCAGCGGGGCGATCGC 12897 Query 29613 GGACACGGTGAATATCGAAGCGATCACGGAGGTGATTGACCGCAAGCTGCGGTATCCGAT 29672 || || | | || | ||||| || ||||| ||| |||| |||| || ||| Sbjct 12898 CGATACCACCAGCGTGGAGTCCATCACCGACGTGATCGACGCCAAGTTGCGCTACCCGGG 12957 Query 29673 GACAGCGCTCGTCGGCATGACGTTTGACGCGCGATCGTTCTCGCAGGTGCCGGTGCGGTC 29732 | ||| || ||||| || ||| || || |||| | | | || || || Sbjct 12958 TTCGGCGATCATCGGCCTGCAGTTCGATGCCTCGCAGTTCCAGTCGATTCCCAACCGCTC 13017 Query 29733 GTACCACGTTCGCGGCCTGATCATTCGGGTGCCGTCGAACTACGATCCCGAGACGCGCAC 29792 | | | | | || | |||||| || ||||| ||||||||||| | || || || Sbjct 13018 CTTCGAATTGCAAGGGCGGATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGAC 13077 Query 29793 GTACTCGGGGGCATGGGACGGGACGTTCAAGCCGGCGTNNNNNNNNNNNNNNNNNNNNNT 29852 ||| || | |||||||| || |||||| |||| | | Sbjct 13078 CTACAGCGGCGTGTGGGACGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGAT 13137 Query 29853 TTTCTACGACCTGCTGCTGAACGATCGCTACGGCCTCGGCAAGACGGTCGACGCGTCGAT 29912 | |||||||||||||||| || | || || |||||||| | | || |||| | Sbjct 13138 CTACTACGACCTGCTGCTGCACCAGCGTTATGGCCTCGGGCACCTGCTCAACGCCGCCCA 13197 Query 29913 GATCGACAAGTGGGGGCTGTACGAAATTGCGCGGTATTGCGACGTCATGGTGTCGGACGG 29972 | | |||||||||| ||||||| || | | ||| |||||| |||||| || || Sbjct 13198 GGTGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCCGATGG 13257 Query 29973 CAGAGGCGGCGTTGAACCGCGCTTCACGTGCAACTGCGTGATCCAGTCGGCCGCCGACGC 30032 || |||||| || |||||||| || |||||| | || | | |||||| || Sbjct 13258 CAAGGGCGGCACCGAGCCGCGCTTTACCTGCAACCTCTATCTCTCGGTGCGCGCCGATGC 13317 Query 30033 GTACAAGGTGCTGCAAGATATTGCCAGCGTGTTCCGCGGCATTTCGTACTGGGGGCCGGG 30092 | || |||||||| || | |||| | ||||||||||| | || ||||| | || Sbjct 13318 GCTGAAAGTGCTGCAGGACCTGGCCACCACCTTCCGCGGCATGGCCTATTGGGGCGCAGG 13377 Query 30093 TGCGGTAGTCGCTTCCGCGGACATGCCTTCCGATCCGGTCTACGTTTACACCGCGGCGAA 30152 |||| | || || |||||||| || ||||| ||| |||| | || || Sbjct 13378 CTCGGTGATGGCGGTGGCCGACATGCCGGAAGACCCGGTGTACACCTACAGCAACGCCAA 13437 Query 30153 CGTGATCGACGGGGCATTTCG-CTACGTAGGGAGCGAGCGCAAGACGCGATACACGGTCG 30211 |||||||||| || | |||| ||||| || | | ||||| || |||| || | Sbjct 13438 CGTGATCGAC-GGCAAGTTCGTCTACGGTGGCTCGGCGAAAAAGACCCGCTACAGCGTGG 13496 Query 30212 CGCTTGTCAGCTACAACGATCCATCGAACCAGTACAAACAGGCGGTCGAGTACGTGCCGG 30271 | || || |||| ||||| || || || ||| ||| ||| ||||||| | Sbjct 13497 CCCTGGTGAGCTGGAACGACCCGGCGGACTTCTACCGGCAGAAGGTGCAGTACGT---CG 13553 Query 30272 ACGA---CGACGGTATTGCGCGTTACGGCGT-CATCAAGACGCAGGTAACGGCGTTCGGT 30327 |||| || || || || ||||| ||||| || | |||| || | || || ||| Sbjct 13554 ACGATCCGGAAGGCATCGCCCGTTATGGCGTGCAGC-AGACCGAGATCACCGCCACCGGC 13612 Query 30328 TGCACGTCGCAGG 30340 ||||| || |||| Sbjct 13613 TGCACCTCCCAGG 13625 >seq813 Length=55966 Score = 138 bits (152), Expect = 3e-28 Identities = 198/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901 ||| |||||||||| || ||| | ||||| | || || || || |||| ||| | Sbjct 23030 GAGATCGCCGAAATTTCCCGCTCGCTCAAGGCGTTAGCCAAAGAGCTGCACGTGCCGGTG 22971 Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 | ||||||||||||||||| || || || | || | |||| || || |||| Sbjct 22970 GTGGCGCTGTCGCAGCTTAACCGCTCTCTGGAACAACGTGCCGACAAACGTCCGGTCAAC 22911 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 ||||| ||||| || || || |||||||||||||||||||| | ||| | ||||||||| Sbjct 22910 TCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGATGCCGACTTAATCATGTTTATCTAC 22851 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCG--CAGATCGCGGTACGGCCGAAATCATCATTG 9079 || |||||||| ||| || |||||| | || || | |||||||| || |||| Sbjct 22850 CGTGATGAGGTTTATCACGAGAACAGCGACCTGA--AAGGGATCGCCGAAATTATTATTG 22793 Query 9080 CGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116 || || || ||||| ||||| || || || || || Sbjct 22792 GTAAACAACGTAACGGCCCGATCGGGACGGTGCGTCT 22756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127542882800424