Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq486 120 4e-22 >seq486 Length=217039 Score = 120 bits (132), Expect = 4e-22 Identities = 257/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Plus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| | ||| |||| || ||||||||||| || | ||| || || || || ||||| || Sbjct 175475 CAATACAAAAGCATCGGCCAGACCTTGGACGCCAATGCCGATAGGTCGGTGCCTCATGTT 175534 Query 116295 AGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 116353 ||||||| || ||| |||||||| |||| |||||||| | | || || || | Sbjct 175535 AGACTTTTTCGCT-TCTGGGACGGGATAGTAATTAACATCGATAATCTTGTTCAGGTTCT 175593 Query 116354 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT 116413 || | | || || | || | || || || ||||| | | | | ||| Sbjct 175594 CAGTTATGATTTTGGTCACTTGTTTTAGTTTCTCAAAATCATATGTTTTATT---TTCGG 175650 Query 116414 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473 | ||| || | | || |||||||||| || || |||| ||||| | | Sbjct 175651 TTACAAACATGTTGACAGCAATTGACGCCAAGTTGCAAACAGCTACTTCATCAGCAGATG 175710 Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 ||||||| | ||| ||||| || | ||| | || ||||| ||||| |||||||||| Sbjct 175711 TGTACTCAACAATCTCCGTGCATAGATTGCTGCATTTGATGGTTCCCAAATTCTTTTGAT 175770 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | |||| |||| || ||||| ||||| ||||| ||||| || || ||||| ||| | Sbjct 175771 TGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATGTATGGAGTTCCAGTCTCTACTTGTG 175830 Query 116594 ACTTGAGAATAGCCTTCCATA 116614 || | |||||||||||||| Sbjct 175831 CCTCAATAATAGCCTTCCATA 175851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613493442101040