Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq486 165 1e-35 >seq486 Length=217039 Score = 165 bits (182), Expect = 1e-35 Identities = 393/589 (67%), Gaps = 4/589 (1%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 |||||| |||||| || ||||| || || || || || |||||| | | | | ||| | Sbjct 174748 CCTTCGCCTTGTCAACAGTGAATTGTATTGCATTTACAGCAGGCTTAGTACGTAAATAAT 174807 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| || ||||| | |||| | | |||| | || | || || || | || ||| | Sbjct 174808 ACATTCCAGTCTTCAAGCCCATTTTCCACGCATAGAAATGAATCGATGTCAATTTTCCAT 174867 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 ||| || || || | || ||||| | || || || ||||| ||||||| | |||| Sbjct 174868 AGTTTGGTTCTGCTACATGGATGTTAAATGATTGACTCTGGTCAATGAAAGCACCACGAT 174927 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||| | ||| |||||||| || ||||||||||| |||||| | | |||| Sbjct 174928 CCGCGGCCATTTGGATTGTGGTCTTCACAGATATCTCCCACACAGTCTTGTAAAGATCTC 174987 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 | | | || || | | ||| | | ||| || || || |||| | || | Sbjct 174988 TTATTTCTTTGGGAATA-CTTTCAATAGACTGAATGGATCCATTGTTGTGTATAATGAGA 175046 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || | || || |||| | || ||| | | || || || | |||||| |||| Sbjct 175047 TTTTTCATATCATCATCCCATA-AATCAGCCTCGGTGAGATCGCGAAGCAGGTGATGGTT 175105 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || | ||| || ||||| || || || | || | | | ||| |||||||| || Sbjct 175106 GACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAAATGTTTGAAGTGAATGGCTC 175165 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 || | || |||||||| | |||||| || ||| ||| ||||||||||| ||||| | Sbjct 175166 AAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCGGTGGGCATGGGGGCCAGCAA 175225 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCAT 204369 ||| ||||| |||| || | ||| || | | ||||||||| ||||||| || Sbjct 175226 CAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTCAGAGCACTCCAGTCCCACAG 175285 Query 204370 CGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTG 204418 | ||||| || |||||||| || | || || || |||| |||| Sbjct 175286 GTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATTCCTTCACTG 175334 Score = 136 bits (150), Expect = 6e-27 Identities = 301/447 (67%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 205160 ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATT 205219 ||||||| ||| || || || ||||||||| | || ||||| || || || | | | Sbjct 175992 ACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCGCGCGCGCACT 176051 Query 205220 CCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGG 205278 | || | || |||||| |||||||| || || || | ||||| ||||||||||| Sbjct 176052 TCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGG-AACTCGAATATGTCAGCGTGCCACGG 176110 Query 205279 CTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGT 205338 ||| | | ||||| | ||||| |||| |||||| || ||||||||||| ||| | Sbjct 176111 CTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCACGTAGCGCGC 176170 Query 205339 CATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTT 205398 | | |||| | || |||||||| |||||||| ||||||| | |||||||||| Sbjct 176171 CGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTTCGTGCCCGC 176230 Query 205399 GATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACAC 205456 |||| | ||||| || || | | || | ||| | || || ||||| | | Sbjct 176231 GATGTAGGTGCCTTTCGCTCTGATGCAATGAACATG--AACTCCTATGCCGCCCGCGGAT 176288 Query 205457 TTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 |||| || || |||| | ||||||| |||||| ||| ||||| |||||| | Sbjct 176289 TTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGTCGTCCTTC 176348 Query 205517 AGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTG 205576 | | | || | || || | |||| | | |||| | || ||| || ||| Sbjct 176349 ATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGAACAGGGTG 176408 Query 205577 GGGCTGGCGTGGCTGAAGCGCTTCTCG 205603 ||||||||||| ||||| ||||||| Sbjct 176409 GGGCTGGCGTGCGTGAAGTACTTCTCG 176435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795137368644640