Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq197 152 1e-31 seq1030 111 4e-19 seq49 86.0 1e-11 >seq197 Length=620651 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| | ||||| || || || |||||||| |||| ||||||||||| || || Sbjct 448111 TCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGT 448170 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| |||||||| || |||||||| |||||||||||||||||| ||| || Sbjct 448171 GCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCC 448230 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || |||| |||||||| | ||| || |||| Sbjct 448231 TTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCCAG 448290 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || |||||||| ||||| || Sbjct 448291 GGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTG 448329 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| ||||||||| | ||| || | ||||| |||||||| Sbjct 446273 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCCAGCTG 446332 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || |||||||||||||||||||||||||| || ||| || || ||||| ||||| Sbjct 446333 TTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTT 446392 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || |||| |||||| | | ||| || |||| ||||| ||||| ||||| Sbjct 446393 GGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGT 446452 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || Sbjct 446453 CAGAGTCTTCACGAAAATCTG 446473 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| | ||||| || || || |||||||| |||| ||||||||||| || || Sbjct 446483 TCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGT 446542 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| |||||||| || |||||||| |||||||||||||||||| ||| || Sbjct 446543 GCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCC 446602 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || |||| |||||||| | ||| || || | Sbjct 446603 TTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCTAG 446662 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || |||||||| ||||| || Sbjct 446663 GGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTG 446701 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| ||||| || |||||||| || | ||||||||| | ||| || | ||||| ||| Sbjct 447668 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCC 447727 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| || || ||||||||||||||||| ||||| ||| || || || || || Sbjct 447728 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 447787 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| |||||| |||| |||||||| | ||| || |||| ||||| ||||| Sbjct 447788 ATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTT 447847 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || ||||| || Sbjct 447848 CCTGTCAGAGTTTTGACGAAAATCTG 447873 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | ||| || || ||||| || |||| ||||||||| | ||| || Sbjct 449571 TCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGT 449630 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| |||||||| || ||||||||||||||||||||||| || || || Sbjct 449631 GCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCC 449690 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| ||| |||| |||||||| | || || ||||| Sbjct 449691 CTCTTTGTCCTGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAA 449750 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || ||||| || || || Sbjct 449751 AGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTG 449789 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||||||||| || |||| || ||||| | ||| || | || ||||| || || Sbjct 446729 GTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTAGTTG 446788 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| || ||||||||||| ||| || ||||| || || ||||| Sbjct 446789 TTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTT 446848 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| |||| |||||||| | ||| || |||| ||||| ||||| || || Sbjct 446849 GGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGCCAGT 446908 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || Sbjct 446909 TAGGGTTTTCACGAAAATCTG 446929 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| |||||||| || | ||||||||| | | || Sbjct 447884 CGCAGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTG 447943 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || |||||||| |||||||||||||| || || || Sbjct 447944 CGGCCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCC 448003 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | ||| || |||| Sbjct 448004 TCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGA 448063 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 448064 GTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTG 448101 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||| || |||| || ||||||| ||| || | || ||||| || || Sbjct 448886 GTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTG 448945 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || ||||||||||| || ||||||||||| ||| || ||||| || || ||||| Sbjct 448946 TTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTT 449005 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 |||||| |||| |||||||| | ||| || |||| ||||| ||||| || || Sbjct 449006 GGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGT 449065 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || Sbjct 449066 TAGGGTTTTCACGAAAATCTG 449086 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| ||||| || |||||||| || | ||||||||| | ||| || | ||||| || Sbjct 448381 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCT 448440 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| || ||||||||||| | | ||||||||| || |||||| ||| || || Sbjct 448441 AGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 448500 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| || || || | | |||||| | ||| || |||| ||||| ||||| Sbjct 448501 ATCTTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTT 448560 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || Sbjct 448561 CCCGTCAGAGTCTTGACAAAGATCTG 448586 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||| || || | ||||||||||| || || | |||||| Sbjct 446949 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCT 447008 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| |||||||||||||| ||| || || || ||| Sbjct 447009 TCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 447068 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| || || | || || || || | ||||| || Sbjct 447069 TGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCGACCTCAAGAGTGATAGTT 447128 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || ||||| || Sbjct 447129 TTACCAGTAAGAGTCTTGACGAAAATCTG 447157 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | ||| || || ||||| || |||| ||||||||||| || || Sbjct 449343 TCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 449402 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||| ||| || || || ||||| | | ||||||||| || |||||| Sbjct 449403 GCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCC 449462 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| |||||| || | ||||||| | ||| || |||| Sbjct 449463 CTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACTTCCAG 449522 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || |||||||| ||||| || Sbjct 449523 GGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTG 449561 >seq1030 Length=27445 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| |||| || | ||| || || || ||||| |||| ||||||||| | || || Sbjct 2679 TCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 2738 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||||||| || || |||||||| || |||||||||||||| || || Sbjct 2739 ACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACC 2798 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| || || ||||| |||||| | | || || || | Sbjct 2799 CTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAG 2858 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || || || Sbjct 2859 GGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTG 2897 >seq49 Length=1360277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| | | || Sbjct 902539 CGCAGGCGCAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTG 902598 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGAC 199505 | ||||| ||||||||||| ||||||||||| |||| Sbjct 902599 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGAC 902635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178894501750198