Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq236 187 3e-42 seq637 140 4e-28 seq962 131 2e-25 >seq236 Length=545527 Score = 187 bits (206), Expect = 3e-42 Identities = 153/186 (82%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 ||||||||||| ||||| | ||||||||||| ||||||||||||| || |||| ||| Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 ||||| || || ||||||||||| ||| | || || || || ||||||||||| || || Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 || ||||| |||||||| |||||||| |||||||||||||| || |||||||| || || Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 51398 CTATAA 51403 || ||| Sbjct 30890 CTGTAA 30895 >seq637 Length=122170 Score = 140 bits (154), Expect = 4e-28 Identities = 159/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 |||||||| ||||| | ||||| ||||| || ||| |||| || || |||||| | Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 ||||||||||| ||||| || ||| | || |||||||| ||||| || ||||| |||||| Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGTCTA 51400 ||||| ||||| |||||||| | ||||||||| |||| || || || || | Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109 Query 51401 TAATGGCAATTGA-TGATATCAAGGGTTATAA 51431 ||| | |||||| ||| |||| | |||| || Sbjct 107108 TAAGTGGAATTGACTGAAATCACGCGTTAAAA 107077 >seq962 Length=32987 Score = 131 bits (144), Expect = 2e-25 Identities = 753/1186 (63%), Gaps = 53/1186 (4%) Strand=Plus/Minus Query 153029 CAACGAAAACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCTGG 153088 ||| |||||||| |||||||| | || |||| || | |||||||| ||||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 153089 TATCGTTTCTAAACA-TATGGCGCGTAACCATATTCTACCGAAACATATTGTTGCGGCGC 153147 |||||| | ||||| |||| | ||| | || | || ||| || | || | |||| Sbjct 25681 TATCGTCGCCAAACACTATGCC-CGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGC 25623 Query 153148 ATGATTCCGGTGATATTCATTATCACGATCTGGATTACAGCCCTTTCACCCC-ATACACT 153206 | || |||||| || || ||||||||||| || || || ||| ||| || | Sbjct 25622 ACGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTC- 25564 Query 153207 AACTGCTGTCTTGTTGACCTGAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCT 153266 ||||| || ||||||||||||||||| | ||||||| ||||||||||| Sbjct 25563 AACTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCC 25504 Query 153267 GATATCGAACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCA 153326 || || |||||||| ||||| ||| || ||||| | | ||| ||||| | ||| Sbjct 25503 GAGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCC 25444 Query 153327 CAGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAATG--TCGATCAGGTGCTGG 153384 ||| | || ||| |||||||| || ||| || || | | || | ||||||| Sbjct 25443 CAGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGG 25386 Query 153385 CCCCTTACGTTGAAATGACG-TACAACAAACACTTTAAAGATGCTGTTTGGTACGGGGTT 153443 |||| | | ||| | | | |||||| ||| ||| || | || | | Sbjct 25385 CCCCGTTTG-TGACCGCAAGCTTCAACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATC 25327 Query 153444 CCTAAATCAAAACAGTATGCG--ATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCC 153501 || | | | |||||| | | | ||||| | ||| || ||||||| Sbjct 25326 CCGGACGCCGACGGCTATGCGCACTCGCGCACTGAGAAAGAGTGCTAT--GACGCGTTCC 25269 Query 153502 AGTCATACGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCA 153561 |||| || ||||| || || ||| | ||||| || || || |||||||| ||||| | Sbjct 25268 AGTCGCTGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTGA 25209 Query 153562 CGATCACTTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAGAAAGCAATTC 153618 | || ||| || |||| || | ||| ||| || |||||||| | | || | Sbjct 25208 CCTTCGGTTTTGGCCTGGGCACCAGCTGG---GAATCGCGTTTGATCCAGCAGTCCATCC 25152 Query 153619 TGAAAAACCGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATTCCCAAAACTGG 153678 || |||||||| || || ||||| || ||| || | || ||||| ||||||| Sbjct 25151 TGCGCAACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACTGG 25092 Query 153679 TTATGTTTATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGA 153738 | | || | ||| | |||| || | || || || || || || Sbjct 25091 TATTCGCCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAAAC 25032 Query 153739 AATTGGCCCTGGAATGTTCTTCAAAGCGTATGTATCCGGATATTATTAGCGCGGCTAATA 153798 | |||| ||||| || | ||||| ||||| ||||||||| | | | | | | Sbjct 25031 AGCTGGCGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGATCA-- 24974 Query 153799 ACCGTCGTA----TTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTC 153854 |||||| | || || | |||| | | | || |||||||| || || ||| Sbjct 24973 --GGTCGTAAAAGTAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCTTC 24922 Query 153855 CTTAGCGTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGC 153914 || |||| | | ||||| |||| | | || | || || ||||| ||||| ||| Sbjct 24921 CTCGGCGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCGGC 24862 Query 153915 GTTGTGACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGAC 153974 || | | | ||||| || || || ||| | || ||| ||| || ||||| Sbjct 24861 GTCATCAGCCTGAACCTGCCGCGCATCGCGCTGGAGGCCAAAG-GCA-----ATGAA--- 24811 Query 153975 GCGCATGATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAA-GCCCT 154033 | || ||| ||| | || |||||||| ||| | ||| || || || || Sbjct 24810 ------GCTGAATTCTGGACACTGCTGGATGAACGCCTGCAGCTG-GCGCGCAAGGCGCT 24758 Query 154034 GATGACTCGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATAC 154093 |||||| ||||||| |||| || || |||||| | || || || ||||| |||| Sbjct 24757 GATGACCCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTATAT 24698 Query 154094 AGAAGGTGCGTTTGGTGTAAGGTTGAAACCCGATGATGAAAT-TCTGGAACTGTTCAAAA 154152 ||||| || | || || | ||||| | || ||||| | ||| || | ||||||| Sbjct 24697 GGAAGGGGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCT-GAGATCTTCAAAA 24639 Query 154153 ATGGACGCAGTTCTATCAGTCTGGGATACATCGGATTGCATGAAAC 154198 | || ||| || || ||||| || ||||| | |||||||| Sbjct 24638 ACGGCCGCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAAC 24593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558054685343040