Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq962 235 6e-57 seq974 230 3e-55 seq236 168 8e-37 >seq962 Length=32987 Score = 235 bits (260), Expect = 6e-57 Identities = 1080/1695 (64%), Gaps = 65/1695 (4%) Strand=Plus/Minus Query 154690 GCCCGTGCATACATCGAATATCGCCACGATCGCGATATTGCCCGTGAACAGAAAAGTAAG 154749 ||||| || ||||| || || ||||||||||| || | |||||| || || Sbjct 25851 GCCCGCGCCTACATTGAGTACCGCCACGATCGTGACGTGCAGCGTGAAAAGCGCGGTCGC 25792 Query 154750 CTGTTCAAAGATATCTCCGGCATGGTGAATCTGTCCAACAAAGAGATCACCAACGAGAAC 154809 ||| | | || ||| ||| |||| | | | ||||| | | ||| || ||| Sbjct 25791 CTGAACCAGGAGATCCGTGGCCTGGTAGAGCAGACCAACTCTGCCCTGCTCAATGAAAAC 25732 Query 154810 GCAAACAAAGACGCACGGGTATTCCCTACACAGCGTGATTTGCTGGCGGGTATTGTAGCG 154869 || ||||||||| || |||| || ||||| ||| ||||||| ||||| || || Sbjct 25731 GCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGGTATCGTCGCC 25672 Query 154870 AAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCATGACTCCGGC 154929 || || | |||||| | || | || ||| || | || |||||| || ||| Sbjct 25671 AAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCACGAGCGCGGT 25612 Query 154930 GACATCCATTATCACGATCTGGACTATAGCCCGTTCACCCCTTACACTAACTGCTGTCTG 154989 || ||||| ||||||||||| |||||| |||||| ||| ||||| ||| Sbjct 25611 GAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAACTGTATGCTG 25552 Query 154990 GTTGACCTGAAAGGTATGCTTGAGAACGGTTTCAAGATGGGTAACGCGGACATTGAACCG 155049 ||||||||||||| ||||| |||| || || ||||||||||| || ||||||||| Sbjct 25551 ATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCGAGATTGAACCG 25492 Query 155050 CCTAAATCGATCGGTGTTGCTACCGCTCTCATGGCGCAGATCACCGCACAGATTGCCTCT 155109 || ||||| ||| || || || ||| ||| ||||| | ||| ||| | ||| Sbjct 25491 CCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCCAGGTCGCCAGC 25432 Query 155110 CACCAGTACGGCGGGACAACCTTTGCGAACGTTGATAAAGTGCTGGCTCCATACGTAGAA 155169 ||| |||||||| || ||| || | |||| |||||||||| || | | | Sbjct 25431 CACATTTACGGCGGCACCACCATTAACCGCATTGACGAAGTGCTGGCCCCGT---TTGTG 25375 Query 155170 ATGACATTCTTCAAACATCTGCGCGA---TGCTGAACATTATGGTATCGAACACTATAAC 155226 | || |||||| | | ||| | || ||| | | ||| || || Sbjct 25374 ACCGCAAGCTTCAACAAGCACCGCAAAACGGCCGAAGAGTGGCAGATCCCGGACGCCGAC 25315 Query 155227 GATTATGTGTATGCAATCGAGAAGACCGAAAAAGA-TG-TATTCGATGCGTTCCAGTCCT 155284 | |||| ||| ||| | || || ||||| || ||| || ||||||||||| Sbjct 25314 GGCTATG----CGCACTCGCG--CACTGAGAAAGAGTGCTAT--GACGCGTTCCAGTCGC 25263 Query 155285 ATGAGTATGAAGTGAATACCCTGCATACTGCCAACGGGCAAACCCCGTTTGTTACCATCA 155344 |||||||| ||||||||||||||||| |||||||| || || |||||||| ||| || Sbjct 25262 TGGAGTATGAGGTGAATACCCTGCATACCGCCAACGGCCAGACGCCGTTTGTGACCTTCG 25203 Query 155345 CTTTCGGTACTGGTACAAGCGACTATGAA---CGCATGATCCAGAAAGCGATTCTGAAAA 155401 ||| || || || || || ||| || |||||||| | | || ||| | Sbjct 25202 GTTTTGGCCTGGGCACCAG---CTGGGAATCGCGTTTGATCCAGCAGTCCATCCTGCGCA 25146 Query 155402 ATCGTATTCGCGGCCTGGGTAAAGAGGGTATCACTCCGGTATTCCCTAAACTGGTTATGT 155461 | ||||| |||||| ||||| | | | || |||| ||||| |||||||| | Sbjct 25145 ACCGTATCTCCGGCCTCGGTAAGAACCGCAAAACGGCGGTGTTCCCGAAACTGGTATTCG 25086 Query 155462 TCATGGAAAAAGGAATCAACCTTGATCCAGAGGATCAGAACTATGACATCAAACAACTTG 155521 ||| | || | |||| | | |||| ||| || ||||||||||| || | Sbjct 25085 CCATCCGCGACGGGCTGAACCACAAAGTTGGCGATCCGAATTACGACATCAAACAGCTGG 25026 Query 155522 CCCTTGAATGTGCTTCGAAACGCATGTACCCAGATATCATTA-----GTTCAGCTAATAA 155576 | || || || || || ||||||||||| ||||| | | | |||| | ||| Sbjct 25025 CGCTGGAGTGCGCGAGCAAGCGCATGTACCCGGATATTCTGAACTACGATCAGGTCGTAA 24966 Query 155577 CCGCGCTATTACTGGTTCTAGCGTTCCTGTATCTCCTATGGGTTGTCGCAGTTTCCTTAG 155636 | | || || | | || | | | || |||||||| ||||| ||||| | Sbjct 24965 AAG-----TAACCGGGT----CATT--TAAAACGCCAATGGGTTGCCGCAGCTTCCTCGG 24917 Query 155637 CGTGTGGCATGATGATAACGGTAATGAAATTCTGGATGGACGTAATAATCTGGGTGTGGT 155696 ||| | | ||||| ||||| | | || | || || ||||| || || || || | Sbjct 24916 CGTATACGAAGATGAAAACGGCGAGCAGATCCACGACGGGCGTAACAACCTCGGCGTCAT 24857 Query 155697 GACAATCAACCTCCCACGTATTGCGATCGAAGCCGAAGCACAGGAAGAAGAAGACGCACA 155756 | | ||||| || || || ||| | || ||| ||| | ||| Sbjct 24856 CAGCCTGAACCTGCCGCGCATCGCGCTGGAGGCCAAAGGCAATGAA-------------- 24811 Query 155757 CGATGCATTTTGGCGTATCCTTGATGAACGTCTGGATCTTTGTTACGATGCTCTGATGAC 155816 | || ||| ||| | || |||||||| ||| | || | | || |||||||| Sbjct 24810 -GCTGAATTCTGGACACTGCTGGATGAACGCCTGCAGCTGGCGCGCAAGGCGCTGATGAC 24752 Query 155817 TCGTATCGAAAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGTACACAGAAGG 155876 ||||||| |||| || || |||||| | || || || ||||| || | ||||| Sbjct 24751 CCGTATCGCCCGCCTTGAAGGGGTAAAAGCCCGCGTGGCGCCTATCCTCTATATGGAAGG 24692 Query 155877 TGCGTTTGGTGTACGCCTGAAACCGGATGATGAAAT-TCTGGAACTGTTCAAAAATGGGC 155935 || | || || ||||||||| |||| ||||| | ||| || | |||||||| || | Sbjct 24691 GGCCTGCGGCGTGCGCCTGAAAGCGGACGATGACGTCTCT-GAGATCTTCAAAAACGGCC 24633 Query 155936 GTAGTTCTATCAGTCTGGGCTATATCGGGCTGCATGAAACGCTGTTGATG-TTTGGCT-C 155993 | || || |||||||||||||| | ||||||| | || ||| || || Sbjct 24632 GCGCGTCGATTTCGCTGGGCTATATCGGCATCCATGAAA--CCATTAATGCCCTGTCTGG 24575 Query 155994 CGGTCAACATCCATTCGATCGCGTTG-GCTCCCAGAACTTCG-GTAAACACGTTCTGGAA 156051 ||| ||| | || ||| | ||| | ||| | || | || | | Sbjct 24574 CGGCACGCATATGTATGACAGCGACGCGCTACGTGAAAAAGGCGTGGCGA--TTGTTCAG 24517 Query 156052 CACCTGAAAAACAAAACTGAACGCTGGAAAGCCGAAACTGGGTATGGATTCAGTCTGTAT 156111 | |||| | || | ||||||| ||||| || || || ||||| ||||| Sbjct 24516 CGCCTGCGCGATGCCGTGGACCAGTGGAAAGAGGAAACCGGCTACGGTTTCAGCCTGTAC 24457 Query 156112 TCAACCCC-AGCGGAATCTCTCTGCCATCGCTTCTGTAAGCTGGACTTTGAGAAGTTCGG 156170 ||||| |||| | | || ||| | |||||||| |||||| | ||||||| Sbjct 24456 AGTACCCCAAGCGAGAAC-CTGTGCGACCGCTTCTGCCGTCTGGACACCGCCGAGTTCGG 24398 Query 156171 AAGCATCAAAGGGGTCACGGATAAAGGCTGGTATACAAACAGTTTCCATCTGGACGTTGA 156230 | | | |||| || || |||||||| | || || ||||| ||||| || ||||| || Sbjct 24397 CATCGTGGAAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACCTCGACGTGGA 24338 Query 156231 CCGCAAGGTAACACCGTTCGAGAAAATCGACTATGAAGCCGATTATCATTACATCGCTAC 156290 ||||||| |||| ||| || ||||||| |||||| | |||| ||||| | Sbjct 24337 GAAGAAGGTAAACCCGTACGACAAGATCGACTTTGAAGCGGCGTATCCGCCGATCGCCAA 24278 Query 156291 TGCTGGTCATATCAGTTATGTTGAATTCCCTGATATGAAAAACAACCTGCAAGCCCTGGA 156350 | || ||| | || | || | ||| | || | |||||||| | || ||||| Sbjct 24277 CGGCGGCTTCATCTGCTACGGCGAGTACCCGAACATTCAGCACAACCTGAAGGCGCTGGA 24218 Query 156351 AAAAGTCTGGGATTA 156365 | | || |||||||| Sbjct 24217 AGACGTGTGGGATTA 24203 >seq974 Length=31311 Score = 230 bits (254), Expect = 3e-55 Identities = 267/359 (74%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 41146 CCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTA 41205 |||||||| || ||| | || ||||| || || || ||||||||| | || || | Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 41206 ATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC---GCGATCGTGAAA 41262 ||||| | |||||| |||| ||| | ||||| |||||| || ||||||||| Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCC---ACGTCCAGCGCCATCGTGAAA 240 Query 41263 TATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGCTATGGGTTCA 41322 || | || || ||||| |||||||| |||||||||| | ||| || || |||| Sbjct 239 TACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGC 180 Query 41323 AAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAG 41382 || || || ||||||||| |||| || ||| ||||||||||| || ||| | ||| Sbjct 179 CCGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAG 120 Query 41383 ACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTAT 41442 |||||||| ||||| || || ||||| ||||| || || ||||| || ||||||| || Sbjct 119 ACGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTAC 60 Query 41443 CCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGA 41501 || || ||||| || ||||| |||| ||||||||| |||||||| |||||||| ||||| Sbjct 59 CCTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq236 Length=545527 Score = 168 bits (186), Expect = 8e-37 Identities = 149/186 (80%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51304 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51363 ||||||||||| || ||| | ||||||||||| ||||||||||||| ||| || || Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 51364 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGT 51423 || |||| |||||||||||||| ||| | || || || ||||| || ||||| || || Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 51424 TTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51483 ||||| || ||||| || ||||| ||||||||||||||||| || |||||||| || || Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 51484 CTATAA 51489 || ||| Sbjct 30890 CTGTAA 30895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565580916563520