Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq962 203 5e-47 seq974 170 3e-37 >seq962 Length=32987 Score = 203 bits (224), Expect = 5e-47 Identities = 819/1275 (64%), Gaps = 35/1275 (3%) Strand=Plus/Plus Query 123848 TTCATGCAATCCAATATAGCCAATGCTAACAGATGCGCGACCATTTTCAAATGCTTTCAT 123907 |||||| | || |||||||| | || || ||||| || |||| || | | ||| Sbjct 24595 TTCATGGATGCCGATATAGCCCAGCGAAATCGACGCGCGGCCGTTTTTGAA-GATCTCAG 24653 Query 123908 -GATGTCATCATTTGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAG 123966 || |||||| | | |||||| || || || || || ||||| | ||| || || || | Sbjct 24654 AGACGTCATCGTCCGCTTTCAGGCGCACGCCGCAGGCCCCTTCCATATAGAGGATAGGCG 24713 Query 123967 CAACGCTTGCCTTGACACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGA 124026 | |||| || || || || || || | | || |||| || || || | | Sbjct 24714 CCACGCGGGCTTTTACCCCTTCAAGGCGGGCGATACGGGTCATCAGCGCCTTGCGCGCCA 24773 Query 124027 TTTCCATACGCTCTTCCAGAATTTCAAAGAAGCGCATTTGATTGCCGTTTGCGTCGAGTG 124086 | || || || ||||| | | |||| || |||||| || || || || | Sbjct 24774 GCTGCAGGCGTTCATCCAGCAGTGTCCAGAATTCAGCTTCATTGCCTTTGGCCTCCAGCG 24833 Query 124087 CGATACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCAT 124146 |||| ||||||| |||||| | | || ||||| ||||| | || || || | | | Sbjct 24834 CGATGCGCGGCAGGTTCAGGCTGATGACGCCGAGGTTGTTACGCCCGTCGTGGATCTGCT 24893 Query 124147 TACCGGTTTCGTCTTCCCAG-CGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAG 124205 ||| |||| ||||| | || | | ||| || ||||| ||||| || ||||| Sbjct 24894 CGCCGTTTTCATCTTCGTATACGCCG-AGGAAGCTGCGGCAACCCATTGGCGTTTTAAAT 24952 Query 124206 CTACCAGTCACTTCTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCA 124265 || || |||| ||| || | ||| || ||| || || || ||||| |||||| Sbjct 24953 GACCCGGTTACTTTTACGACCTGATCGTAGTTCAGAATATCCGGGTACATGCGCTTGCTC 25012 Query 124266 GCGCACTCCAGTGCCATCTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTTGTGT 124325 ||||||||||| |||| ||||||||| || ||||| ||| ||| | Sbjct 25013 GCGCACTCCAGCGCCAGCTGTTTGATGTCGTAATTCGGATCGCCAACTTTGTGGTTCAGC 25072 Query 124326 CCGTCTTTCAGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGA 124385 ||||| | ||||| || ||||||||||| || | || | | | || || || Sbjct 25073 CCGTCGCGGATGGCGAATACCAGTTTCGGGAACACCGCCGTTTTGCGGTTCTTACCGAGG 25132 Query 124386 CCTTTCATCCGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCT 124445 || || || ||| || | | ||| || | ||||||||||| ||||| Sbjct 25133 CCGGAGATACGGTTGCGCAGGATGGACTGCTGGATCAAACGCGATTCCCAGCTGGTGCCC 25192 Query 124446 AGTCCAAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACC 124505 || ||||| ||||| || || || || || || || || | ||||| || || ||| Sbjct 25193 AGGCCAAAACCGAAGGTCACAAACGGCGTCTGGCCGTTGGCGGTATGCAGGGTATTCACC 25252 Query 124506 TCATACTCTAGGCTTTGCATTGCATCATA-CACGGCTTTGCGAGTCTTTTCAATAGCGTA 124564 |||||||| || || | || ||||| ||| |||| ||| | | ||| | Sbjct 25253 TCATACTCCAGCGACTGGAACGCGTCATAGCACT-CTTTCTCAGTGCG--CGAGTGCGCA 25309 Query 124565 TTGCCTTTGA--TCTGGAATTTTCCAATAACGCGCTTCATCCAAAT-GCTTTTCATGTGT 124621 | ||| | | || || || | ||| | |||| || | || | | ||| Sbjct 25310 TAGCCGTCGGCGTCCGGGATCTGCCACT------CTTCGGCCGTTTTGCGGTGCTTGTTG 25363 Query 124622 CATCTTA-----ACATAAGGTGCCAATGCTTCGTCAATGCGATTAATTGTGTTGCCACCA 124676 | ||| ||| | || |||| ||||||||||||| ||||| ||| |||| || Sbjct 25364 AAGCTTGCGGTCACAAACGGGGCCAGCACTTCGTCAATGCGGTTAATGGTGGTGCCGCCG 25423 Query 124677 TAAATGTGACTTGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGATG 124736 |||||||| || || ||||| || || || || || || || || | ||||| | |||| Sbjct 25424 TAAATGTGGCTGGCGACCTGGGCGATAATCTGTGCCGTGACCGCAGTGGCGGTGGAGATG 25483 Query 124737 CTCTTAGGAGTTTCGATCTGTGCATTACCCATGCGGAACCCACGCTCTAACATGCCGTTG 124796 || || | ||| |||| || |||||||| ||||| | | |||||| || Sbjct 25484 GATTTTGGCGGTTCAATCTCGGCGTTACCCATTTTAAACCCGTGGGTCAGCATGCCTTTC 25543 Query 124797 AGATCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAG 124856 || ||||||| ||| ||||| ||||| ||||||||||| || || || ||||| || || Sbjct 25544 AGGTCAATCAGCATACAGTTGAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGATAG 25603 Query 124857 TGAATAAAACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAGATAGTGCT---TTGCA 124913 || || ||| ||||| ||| | || ||| |||||| ||||| ||| Sbjct 25604 TGGATCTCACCGCGCTCGTGCGCTGAGACCACATCGCGCGGCAGCAGGTGCTGACGGGCA 25663 Query 124914 AAGTGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCT 124973 |||| ||| || || || || | | |||||| || || || || ||||| ||| Sbjct 25664 TAGTGTTTGGCGACGATACCGGCCAGCAGATCGCGCTGGGTGGGGATCACTTTACTGTCT 25723 Query 124974 TTGTTTGCATTCTCATTCATGATCCC----TTCGTCTTCTTGCTTCATCAGTCCGACGAT 125029 ||||| || || ||||| | | | || ||| |||| | ||| || ||| Sbjct 25724 TTGTTGGCGTTTTCATTGAGCAGGGCAGAGTTGGTC----TGCTCTACCAGGCC-ACGGA 25778 Query 125030 TCGCTTGG-TCATATCGCTGTTCATATCGCGAGCAACGTCACGATCATAGCGGTATTCGA 125088 || | ||| ||| | | | | || || ||||||||||| | |||||| || | Sbjct 25779 TCTCCTGGTTCAGGCGACCGCGCTTTTCACGCTGCACGTCACGATCGTGGCGGTACTCAA 25838 Query 125089 TGTAGGCGCGAGCCA 125103 |||||||||| |||| Sbjct 25839 TGTAGGCGCGGGCCA 25853 >seq974 Length=31311 Score = 170 bits (188), Expect = 3e-37 Identities = 256/361 (71%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 129109 TCAACGCCCTTGTTATTCTTGAGCACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGG 129168 ||||| || ||| || || || || || | |||| ||||| ||||||||||| ||| Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 129169 TAATATAGAGTTGCGGCACCGCCGCGAACACCACCCTGTGAACAGCTCTTTACCGCAGTC 129228 || | || || || ||||||||||| || || ||||| || ||| |||||||| ||| Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 129229 TGGAAGTATTTCCAAAATGGGATAATACCGGTATGTCGCACTTCACCGCTACGAATGCGA 129288 ||||||| || | || |||||| ||||| || ||||||||| ||||| || Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAAT-CGG 179 Query 129289 GAT-CCCTCGGCACGAATCGCACCGCCGTTGATGCCGATACCAGCGCGTTTGCTGATATA 129347 | | ||| ||||| || |||| |||||||||||||||| || || | | | || Sbjct 180 GCTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTA 239 Query 129348 GTCAACGATAGAACTAGCGGTAGCGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTT 129407 | ||||| | || | || ||||||||| |||||| ||| ||||| |||||| Sbjct 240 TTTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAG 299 Query 129408 GACACAAGAGCTAAACTGCCGAGTCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 || || ||||| ||||| || || |||||||| || || | | || || || ||||| Sbjct 300 TACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAG 359 Query 129468 A 129468 | Sbjct 360 A 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720713437638720