Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq486 178 2e-39 >seq486 Length=217039 Score = 178 bits (196), Expect = 2e-39 Identities = 836/1311 (64%), Gaps = 24/1311 (2%) Strand=Plus/Minus Query 111933 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCG-CAA 111991 || ||||| ||||| | ||| ||| |||||||| || |||| ||||| | ||| Sbjct 176197 CCCATGCTGCGCGTGTACAACAACACGGCGCGCTACGTGGACCA----GGGCGGCAACAA 176142 Query 111992 G------GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCT 112045 | || | |||| ||||| || ||||| |||||||| || || | |||||||| Sbjct 176141 GCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTGGCACGCTGACATATTCGAGTTCCT 176082 Query 112046 TGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCT 112105 || ||| ||| || | ||||| | ||| || || || |||| ||||| Sbjct 176081 AGACTTGAAGAAGAACACGGGCAAAGAGGAAGTGCGCGCGCGAGAGCTGTTCTATGCTCT 176022 Query 112106 CTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTG 112165 ||||| ||||||| ||||||||||| |||||| | | | | ||| || | || Sbjct 176021 GTGGATCTCAGATCTATTCATGAAGAGGGTTGAGAACAACGAGGAGTGGAGCCTTATGTG 175962 Query 112166 TCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTA-CA 112224 || || | || || | | ||| ||| || || ||||| || | || || Sbjct 175961 CCCTCACGACAGCCCTGGCTTGGCTGATTGTTGGGGAGATGAATTTGATGCATTATATCA 175902 Query 112225 CAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAA 112283 ||| || || ||||| || || | | || | ||| | || | ||||| Sbjct 175901 GAAA-TATGAACAAGAAGGTAGGTTTGTTAAAAAAGTCCGCGCT-CAAATCCTATGGAAG 175844 Query 112284 GCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGT 112343 |||||| | || | ||| |||||||| || ||||| |||||||||||||| || || Sbjct 175843 GCTATTATTGAGGCACAAGTAGAGACTGGAACTCCATACATGCTTTACAAAGATGCATGC 175784 Query 112344 AACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAA 112403 ||| |||||| ||||||||||||||||| ||||| | ||| || || || || Sbjct 175783 AACAGAAAGAGCAATCAAAAGAATTTGGGAACCATCAAATGCAGCAATCTATGCACGGAG 175724 Query 112404 ATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTC 112463 || | || | ||| ||||| ||||| || ||| | || ||||| ||| || Sbjct 175723 ATTGTTGAGTACACATCTGCTGATGAAGTAGCTGTTTGCAACTTGGCGTCAATTGCTGTC 175664 Query 112464 CCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 112523 || || ||| | || || | || |||| ||||| ||| ||||| | |||| || Sbjct 175663 AACATGTTTGT--AACC-GAAAATAAAACATATGATTTTGAGAAACTAAAACAAGTGACC 175607 Query 112524 AAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGAC 112582 |||| | || | ||||| |||| |||| ||| |||| || ||||| ||| Sbjct 175606 AAAATCATAACTGAGAACCTGAACAAGATTATCGATGTTAATTACTATCCCGTCCCAGA- 175548 Query 112583 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGA 112642 || || ||||| ||||| ||||| || || || | || ||||||||||| || || Sbjct 175547 AGCGAAAAAGTCTAACATGAGGCACCGACCTATCGGCATTGGCGTCCAAGGTCTGGCCGA 175488 Query 112643 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 112702 || || | | |||| | | || || | ||| || | ||||| | Sbjct 175487 TGCTTTTGTATTGATGCGCCTTCCTTACGAGAGTGAAGGAGCCCAGAAGCTCAATCAACA 175428 Query 112703 TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGA 112762 |||||||| || || ||| | | ||| | || || || | || |||| || Sbjct 175427 AATATTTGAAACCATCTATTATGGGGCTTTAGAAGCTAGCTGTGAACTGGCCGAAAAACT 175368 Query 112763 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATAT 112822 || |||||||| | || |||| ||| || |||| | | |||| ||| || Sbjct 175367 CGGCGTTTATGAAACGTATGCTGGTTGTCCGGCCAGTGAAGGAATATTGCAATATGAAAT 175308 Query 112823 GT-GGGAAGGTGAGACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGG 112881 || ||||| | | ||| | | |||||| ||||| ||| | ||| | Sbjct 175307 GTGGGGAAAGACA-CCCACAGACCTGTGGGACTGGAGTGCTCTGAAGCAGAAGATCGCGA 175249 Query 112882 AGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA 112941 | | || || || ||| ||| ||| |||| || ||||| || |||||||| ||||| | Sbjct 175248 AACATGGCCTGCGGAACTCTCTGTTGCTGGCCCCCATGCCCACCGCCTCCACTGCACAGA 175189 Query 112942 TCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCC 113001 | | || || ||||||| ||||| || | ||| | ||||| || | |||||| | Sbjct 175188 TTCTTGGCAACAATGAATCATTTGAGCCATTCACTTCAAACATTTACCAAAGAAGAGTTC 175129 Query 113002 TCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTC 113061 | | ||||| || | | |||||| | || || | || |||| ||| || | Sbjct 175128 TTTCTGGAGAATTCCAGGTGGTCAACCATCACCTGCTTCGCGATCTCACCGAGGCTGATT 175069 Query 113062 TCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG 113121 | ||| | |||||||| ||||||| | | ||| |||||||| ||||| Sbjct 175068 TATGGGATGATGATATGAAAAATCTCATTATACACAACAATGGATCCATTCAGTCTATTG 175009 Query 113122 TGGATATTCCAGATGAAATTAAGA-AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAG 113180 |||||| | |||| ||||| | | ||| || || ||||| || ||||| Sbjct 175008 AAAGTATTCCCAAAGAAA-TAAGAGATCTTTACAAGACTGTGTGGGAGATATCTGTGAAG 174950 Query 113181 GATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 113231 || | |||||||| ||||||||| |||||||| || |||||| Sbjct 174949 ACCACAATCCAAATGGCCGCGGATCGTGGTGCTTTCATTGACCAGAGTCAA 174899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620728479851680